miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8998 5' -53.6 NC_002512.2 + 89327 0.66 0.991426
Target:  5'- uGAcGACCUUCGAGGuagaggaccagaACGGCgUCgagGCGg -3'
miRNA:   3'- gCU-CUGGAGGCUCC------------UGCUGaAGa--UGC- -5'
8998 5' -53.6 NC_002512.2 + 90500 0.67 0.97833
Target:  5'- aCGGGAUCggggCCGAGGcCGGCggCggACGa -3'
miRNA:   3'- -GCUCUGGa---GGCUCCuGCUGaaGa-UGC- -5'
8998 5' -53.6 NC_002512.2 + 91869 0.67 0.982493
Target:  5'- cCGAGGCCgccgUCCGGcgcGGGCGGCggCgcgGCGc -3'
miRNA:   3'- -GCUCUGG----AGGCU---CCUGCUGaaGa--UGC- -5'
8998 5' -53.6 NC_002512.2 + 94388 0.66 0.992477
Target:  5'- gCGuGGCCaugaUCuUGAGGACGGCggUCUugGc -3'
miRNA:   3'- -GCuCUGG----AG-GCUCCUGCUGa-AGAugC- -5'
8998 5' -53.6 NC_002512.2 + 97127 0.75 0.697435
Target:  5'- gGAGACCUUCGcccgccugcGGGACGACgccgcgCUGCGc -3'
miRNA:   3'- gCUCUGGAGGC---------UCCUGCUGaa----GAUGC- -5'
8998 5' -53.6 NC_002512.2 + 98185 0.66 0.98757
Target:  5'- gCGGcGACCgUCCGAGGgAUGGCgUUCU-CGg -3'
miRNA:   3'- -GCU-CUGG-AGGCUCC-UGCUG-AAGAuGC- -5'
8998 5' -53.6 NC_002512.2 + 99920 0.71 0.898758
Target:  5'- gGGGGCCcgCCGaAGGGCGGCgucggCUGCu -3'
miRNA:   3'- gCUCUGGa-GGC-UCCUGCUGaa---GAUGc -5'
8998 5' -53.6 NC_002512.2 + 100069 0.66 0.993422
Target:  5'- gGGGGCCgcgggCCGGGGACGGa----GCGg -3'
miRNA:   3'- gCUCUGGa----GGCUCCUGCUgaagaUGC- -5'
8998 5' -53.6 NC_002512.2 + 101801 0.71 0.910877
Target:  5'- gGAGcGCUUCCGAGGA-GGCUUCcuggGCGc -3'
miRNA:   3'- gCUC-UGGAGGCUCCUgCUGAAGa---UGC- -5'
8998 5' -53.6 NC_002512.2 + 103611 0.67 0.982493
Target:  5'- uCGAcGGCCUCCcgguaccgcugGAGGuCGGCUUCggACa -3'
miRNA:   3'- -GCU-CUGGAGG-----------CUCCuGCUGAAGa-UGc -5'
8998 5' -53.6 NC_002512.2 + 103893 0.66 0.993332
Target:  5'- aCGAGACCUUCacGGcccugaaGCG-CUUCUGCGu -3'
miRNA:   3'- -GCUCUGGAGGcuCC-------UGCuGAAGAUGC- -5'
8998 5' -53.6 NC_002512.2 + 104860 0.66 0.98757
Target:  5'- aGGGACCUCgCGcagcGGGCGGCgccgACGg -3'
miRNA:   3'- gCUCUGGAG-GCu---CCUGCUGaagaUGC- -5'
8998 5' -53.6 NC_002512.2 + 108370 0.66 0.992477
Target:  5'- gGAGcuCC-CCGAGGAUGACgUUCaUGCu -3'
miRNA:   3'- gCUCu-GGaGGCUCCUGCUG-AAG-AUGc -5'
8998 5' -53.6 NC_002512.2 + 108592 0.7 0.932419
Target:  5'- gGGGGCC-CCGGGGAgCGGCggCcGCGg -3'
miRNA:   3'- gCUCUGGaGGCUCCU-GCUGaaGaUGC- -5'
8998 5' -53.6 NC_002512.2 + 121559 0.68 0.970775
Target:  5'- aCGAGACgcUgGAGGACGugUUCU-CGu -3'
miRNA:   3'- -GCUCUGgaGgCUCCUGCugAAGAuGC- -5'
8998 5' -53.6 NC_002512.2 + 122900 0.72 0.864683
Target:  5'- gGAGACga-CGAGGACGACggcaUCUACu -3'
miRNA:   3'- gCUCUGgagGCUCCUGCUGa---AGAUGc -5'
8998 5' -53.6 NC_002512.2 + 123001 0.66 0.98757
Target:  5'- --cGACCUCCuGAGGAucCGGCUgcUCgUGCGc -3'
miRNA:   3'- gcuCUGGAGG-CUCCU--GCUGA--AG-AUGC- -5'
8998 5' -53.6 NC_002512.2 + 123174 0.66 0.992477
Target:  5'- cCGAGGCCgaggCCGAGGcGgGACggg-ACGa -3'
miRNA:   3'- -GCUCUGGa---GGCUCC-UgCUGaagaUGC- -5'
8998 5' -53.6 NC_002512.2 + 125154 0.67 0.984333
Target:  5'- gGGGGCC-CCGGGGGCgGGCgg--ACGg -3'
miRNA:   3'- gCUCUGGaGGCUCCUG-CUGaagaUGC- -5'
8998 5' -53.6 NC_002512.2 + 127534 0.7 0.922101
Target:  5'- cCGAGACUgcaggCCGAGGACGcGCUUgU-CGu -3'
miRNA:   3'- -GCUCUGGa----GGCUCCUGC-UGAAgAuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.