miRNA display CGI


Results 41 - 60 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8998 5' -53.6 NC_002512.2 + 128206 0.72 0.871914
Target:  5'- gCGGGACCggggaCGGGGACGACUgUCUcCa -3'
miRNA:   3'- -GCUCUGGag---GCUCCUGCUGA-AGAuGc -5'
8998 5' -53.6 NC_002512.2 + 128569 0.77 0.608127
Target:  5'- uCGAcGGCCUCCGGGGGcCGACc-CUGCGa -3'
miRNA:   3'- -GCU-CUGGAGGCUCCU-GCUGaaGAUGC- -5'
8998 5' -53.6 NC_002512.2 + 129088 0.74 0.754986
Target:  5'- --cGACC-CCGAGGACGgGCggcgUCUGCGg -3'
miRNA:   3'- gcuCUGGaGGCUCCUGC-UGa---AGAUGC- -5'
8998 5' -53.6 NC_002512.2 + 130257 0.8 0.455196
Target:  5'- cCGGGcCCUCCGAGGGCGACgaCcGCGa -3'
miRNA:   3'- -GCUCuGGAGGCUCCUGCUGaaGaUGC- -5'
8998 5' -53.6 NC_002512.2 + 130664 0.76 0.677746
Target:  5'- gCGGGGCuCUCCGAGGACcggGACgggCUGCu -3'
miRNA:   3'- -GCUCUG-GAGGCUCCUG---CUGaa-GAUGc -5'
8998 5' -53.6 NC_002512.2 + 130978 0.75 0.707206
Target:  5'- gGAGACCUCgGAGGAgGAgaUCggGCGa -3'
miRNA:   3'- gCUCUGGAGgCUCCUgCUgaAGa-UGC- -5'
8998 5' -53.6 NC_002512.2 + 133841 0.68 0.964791
Target:  5'- gGAGGCCUcuccggaggacaCCGAGGACGucCUgggGCGg -3'
miRNA:   3'- gCUCUGGA------------GGCUCCUGCu-GAagaUGC- -5'
8998 5' -53.6 NC_002512.2 + 134236 0.66 0.990263
Target:  5'- aGAGGCUgugCCGGGGGCGGCc------ -3'
miRNA:   3'- gCUCUGGa--GGCUCCUGCUGaagaugc -5'
8998 5' -53.6 NC_002512.2 + 134651 0.66 0.993422
Target:  5'- -cGGAcgcccCCUCCgGAGaACGAUUUCUACGa -3'
miRNA:   3'- gcUCU-----GGAGG-CUCcUGCUGAAGAUGC- -5'
8998 5' -53.6 NC_002512.2 + 138054 0.67 0.97833
Target:  5'- gCGGGACCggaUCCGGGuGACGAacacgagaCUgCUGCGu -3'
miRNA:   3'- -GCUCUGG---AGGCUC-CUGCU--------GAaGAUGC- -5'
8998 5' -53.6 NC_002512.2 + 138431 0.75 0.726558
Target:  5'- --uGACCUUCGAGGugGAacaCUUCUGCc -3'
miRNA:   3'- gcuCUGGAGGCUCCugCU---GAAGAUGc -5'
8998 5' -53.6 NC_002512.2 + 142260 0.66 0.992477
Target:  5'- uGGGAuccggucgucguCCgggCCGGGGACGGCgUCgACGg -3'
miRNA:   3'- gCUCU------------GGa--GGCUCCUGCUGaAGaUGC- -5'
8998 5' -53.6 NC_002512.2 + 143369 0.66 0.992477
Target:  5'- uGGGGCCUCCccgcucaAGGACGGCUauaaaccgUCUccucACGu -3'
miRNA:   3'- gCUCUGGAGGc------UCCUGCUGA--------AGA----UGC- -5'
8998 5' -53.6 NC_002512.2 + 145255 0.67 0.980494
Target:  5'- -uGGGCCgCCGccuGGACGACgaccugCUGCGg -3'
miRNA:   3'- gcUCUGGaGGCu--CCUGCUGaa----GAUGC- -5'
8998 5' -53.6 NC_002512.2 + 150039 0.68 0.970775
Target:  5'- aCGAGGgggCCGGGGACGACggg-GCGg -3'
miRNA:   3'- -GCUCUggaGGCUCCUGCUGaagaUGC- -5'
8998 5' -53.6 NC_002512.2 + 150318 0.66 0.993422
Target:  5'- gCGAGACCggcggCGAGGACGcCgcg-GCGg -3'
miRNA:   3'- -GCUCUGGag---GCUCCUGCuGaagaUGC- -5'
8998 5' -53.6 NC_002512.2 + 155305 0.68 0.973477
Target:  5'- cCGuGACCauggCCGAGGACGAUcUCg--- -3'
miRNA:   3'- -GCuCUGGa---GGCUCCUGCUGaAGaugc -5'
8998 5' -53.6 NC_002512.2 + 156448 0.72 0.84963
Target:  5'- gGGGGgCUCCGGGGGCGGCgggggacUCggggGCGg -3'
miRNA:   3'- gCUCUgGAGGCUCCUGCUGa------AGa---UGC- -5'
8998 5' -53.6 NC_002512.2 + 156836 0.74 0.773439
Target:  5'- gCGAGGCCUgCGGGGGCcGCUgCUGCc -3'
miRNA:   3'- -GCUCUGGAgGCUCCUGcUGAaGAUGc -5'
8998 5' -53.6 NC_002512.2 + 157262 0.71 0.898758
Target:  5'- --cGACCggCGAGGACGugUUCgugGCGc -3'
miRNA:   3'- gcuCUGGagGCUCCUGCugAAGa--UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.