Results 41 - 60 of 94 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8998 | 5' | -53.6 | NC_002512.2 | + | 91869 | 0.67 | 0.982493 |
Target: 5'- cCGAGGCCgccgUCCGGcgcGGGCGGCggCgcgGCGc -3' miRNA: 3'- -GCUCUGG----AGGCU---CCUGCUGaaGa--UGC- -5' |
|||||||
8998 | 5' | -53.6 | NC_002512.2 | + | 103611 | 0.67 | 0.982493 |
Target: 5'- uCGAcGGCCUCCcgguaccgcugGAGGuCGGCUUCggACa -3' miRNA: 3'- -GCU-CUGGAGG-----------CUCCuGCUGAAGa-UGc -5' |
|||||||
8998 | 5' | -53.6 | NC_002512.2 | + | 212536 | 0.67 | 0.980494 |
Target: 5'- uCGGGAUCgucgaCGGGGACGACgaugACGa -3' miRNA: 3'- -GCUCUGGag---GCUCCUGCUGaagaUGC- -5' |
|||||||
8998 | 5' | -53.6 | NC_002512.2 | + | 145255 | 0.67 | 0.980494 |
Target: 5'- -uGGGCCgCCGccuGGACGACgaccugCUGCGg -3' miRNA: 3'- gcUCUGGaGGCu--CCUGCUGaa----GAUGC- -5' |
|||||||
8998 | 5' | -53.6 | NC_002512.2 | + | 164165 | 0.67 | 0.980285 |
Target: 5'- uCGAGGacaccccgcccuaUCUCCGGGGccucgACGACUUCaUGCa -3' miRNA: 3'- -GCUCU-------------GGAGGCUCC-----UGCUGAAG-AUGc -5' |
|||||||
8998 | 5' | -53.6 | NC_002512.2 | + | 213559 | 0.67 | 0.97833 |
Target: 5'- gCGGGguccGCCUCgaGAGGAgGACUUgaGCGa -3' miRNA: 3'- -GCUC----UGGAGg-CUCCUgCUGAAgaUGC- -5' |
|||||||
8998 | 5' | -53.6 | NC_002512.2 | + | 161841 | 0.67 | 0.97833 |
Target: 5'- aCGAGGCUUCCGGacACGGCgUCgGCGg -3' miRNA: 3'- -GCUCUGGAGGCUccUGCUGaAGaUGC- -5' |
|||||||
8998 | 5' | -53.6 | NC_002512.2 | + | 192575 | 0.66 | 0.990263 |
Target: 5'- cCGGGGCCUCgGAgcGGACcgucccGCUgCUGCGg -3' miRNA: 3'- -GCUCUGGAGgCU--CCUGc-----UGAaGAUGC- -5' |
|||||||
8998 | 5' | -53.6 | NC_002512.2 | + | 209062 | 0.66 | 0.991426 |
Target: 5'- aCGGcuCCUCCGAcGACGuCUUCgUGCGg -3' miRNA: 3'- -GCUcuGGAGGCUcCUGCuGAAG-AUGC- -5' |
|||||||
8998 | 5' | -53.6 | NC_002512.2 | + | 134651 | 0.66 | 0.993422 |
Target: 5'- -cGGAcgcccCCUCCgGAGaACGAUUUCUACGa -3' miRNA: 3'- gcUCU-----GGAGG-CUCcUGCUGAAGAUGC- -5' |
|||||||
8998 | 5' | -53.6 | NC_002512.2 | + | 200255 | 0.66 | 0.993422 |
Target: 5'- gGGGACga-CGAGGACGACg---ACGg -3' miRNA: 3'- gCUCUGgagGCUCCUGCUGaagaUGC- -5' |
|||||||
8998 | 5' | -53.6 | NC_002512.2 | + | 167165 | 0.66 | 0.993422 |
Target: 5'- gCGAGGCCgUCGAccGCGACgcgCUGCGc -3' miRNA: 3'- -GCUCUGGaGGCUccUGCUGaa-GAUGC- -5' |
|||||||
8998 | 5' | -53.6 | NC_002512.2 | + | 150318 | 0.66 | 0.993422 |
Target: 5'- gCGAGACCggcggCGAGGACGcCgcg-GCGg -3' miRNA: 3'- -GCUCUGGag---GCUCCUGCuGaagaUGC- -5' |
|||||||
8998 | 5' | -53.6 | NC_002512.2 | + | 100069 | 0.66 | 0.993422 |
Target: 5'- gGGGGCCgcgggCCGGGGACGGa----GCGg -3' miRNA: 3'- gCUCUGGa----GGCUCCUGCUgaagaUGC- -5' |
|||||||
8998 | 5' | -53.6 | NC_002512.2 | + | 103893 | 0.66 | 0.993332 |
Target: 5'- aCGAGACCUUCacGGcccugaaGCG-CUUCUGCGu -3' miRNA: 3'- -GCUCUGGAGGcuCC-------UGCuGAAGAUGC- -5' |
|||||||
8998 | 5' | -53.6 | NC_002512.2 | + | 159960 | 0.66 | 0.992477 |
Target: 5'- gGAGACCUaCCGGGaGAccuCGACcugCUACc -3' miRNA: 3'- gCUCUGGA-GGCUC-CU---GCUGaa-GAUGc -5' |
|||||||
8998 | 5' | -53.6 | NC_002512.2 | + | 162901 | 0.66 | 0.992477 |
Target: 5'- uGAGcCCUUCGAGGAgGACaccgccaacUUCcGCGu -3' miRNA: 3'- gCUCuGGAGGCUCCUgCUG---------AAGaUGC- -5' |
|||||||
8998 | 5' | -53.6 | NC_002512.2 | + | 143369 | 0.66 | 0.992477 |
Target: 5'- uGGGGCCUCCccgcucaAGGACGGCUauaaaccgUCUccucACGu -3' miRNA: 3'- gCUCUGGAGGc------UCCUGCUGA--------AGA----UGC- -5' |
|||||||
8998 | 5' | -53.6 | NC_002512.2 | + | 108370 | 0.66 | 0.992477 |
Target: 5'- gGAGcuCC-CCGAGGAUGACgUUCaUGCu -3' miRNA: 3'- gCUCu-GGaGGCUCCUGCUG-AAG-AUGc -5' |
|||||||
8998 | 5' | -53.6 | NC_002512.2 | + | 94388 | 0.66 | 0.992477 |
Target: 5'- gCGuGGCCaugaUCuUGAGGACGGCggUCUugGc -3' miRNA: 3'- -GCuCUGG----AG-GCUCCUGCUGa-AGAugC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home