Results 61 - 80 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8998 | 5' | -53.6 | NC_002512.2 | + | 128206 | 0.72 | 0.871914 |
Target: 5'- gCGGGACCggggaCGGGGACGACUgUCUcCa -3' miRNA: 3'- -GCUCUGGag---GCUCCUGCUGA-AGAuGc -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 11476 | 0.75 | 0.745601 |
Target: 5'- gGAGACCg-CGAGGACGACgacgACGg -3' miRNA: 3'- gCUCUGGagGCUCCUGCUGaagaUGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 11308 | 0.75 | 0.716916 |
Target: 5'- gGAGACCUCCGAGaGAUGGCcgaCgcgACGg -3' miRNA: 3'- gCUCUGGAGGCUC-CUGCUGaa-Ga--UGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 97127 | 0.75 | 0.697435 |
Target: 5'- gGAGACCUUCGcccgccugcGGGACGACgccgcgCUGCGc -3' miRNA: 3'- gCUCUGGAGGC---------UCCUGCUGaa----GAUGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 49462 | 0.77 | 0.638006 |
Target: 5'- cCGGGgcGCCgucaCCGAGGACGACUUCgacUACGc -3' miRNA: 3'- -GCUC--UGGa---GGCUCCUGCUGAAG---AUGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 9025 | 0.71 | 0.892368 |
Target: 5'- cCGAGGCC-CCGcGGACGACguagACGc -3' miRNA: 3'- -GCUCUGGaGGCuCCUGCUGaagaUGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 108592 | 0.7 | 0.932419 |
Target: 5'- gGGGGCC-CCGGGGAgCGGCggCcGCGg -3' miRNA: 3'- gCUCUGGaGGCUCCU-GCUGaaGaUGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 58012 | 0.7 | 0.932419 |
Target: 5'- gGGGACg-CCGAGGACGGCgUUCcGCc -3' miRNA: 3'- gCUCUGgaGGCUCCUGCUG-AAGaUGc -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 12384 | 0.66 | 0.991426 |
Target: 5'- cCGAGcucGCCUUCGGGcGGCGGCg---GCGg -3' miRNA: 3'- -GCUC---UGGAGGCUC-CUGCUGaagaUGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 47891 | 0.66 | 0.990263 |
Target: 5'- --uGACC-CCGAGGACGcCgccacCUACGu -3' miRNA: 3'- gcuCUGGaGGCUCCUGCuGaa---GAUGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 134236 | 0.66 | 0.990263 |
Target: 5'- aGAGGCUgugCCGGGGGCGGCc------ -3' miRNA: 3'- gCUCUGGa--GGCUCCUGCUGaagaugc -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 4611 | 0.66 | 0.98898 |
Target: 5'- gCGAGACggacgCCGAGGACGcCcUCcugGCGg -3' miRNA: 3'- -GCUCUGga---GGCUCCUGCuGaAGa--UGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 123001 | 0.66 | 0.98757 |
Target: 5'- --cGACCUCCuGAGGAucCGGCUgcUCgUGCGc -3' miRNA: 3'- gcuCUGGAGG-CUCCU--GCUGA--AG-AUGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 46791 | 0.66 | 0.98757 |
Target: 5'- uCGaAGACCUCCGucugaaGACGACgUCggACGa -3' miRNA: 3'- -GC-UCUGGAGGCuc----CUGCUGaAGa-UGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 104860 | 0.66 | 0.98757 |
Target: 5'- aGGGACCUCgCGcagcGGGCGGCgccgACGg -3' miRNA: 3'- gCUCUGGAG-GCu---CCUGCUGaagaUGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 125154 | 0.67 | 0.984333 |
Target: 5'- gGGGGCC-CCGGGGGCgGGCgg--ACGg -3' miRNA: 3'- gCUCUGGaGGCUCCUG-CUGaagaUGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 49222 | 0.67 | 0.980494 |
Target: 5'- uGAGAUCUUCGGGGccaccGCGGCggcCUGCc -3' miRNA: 3'- gCUCUGGAGGCUCC-----UGCUGaa-GAUGc -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 36588 | 0.68 | 0.973477 |
Target: 5'- gGAGACCUCC-AGGAgaGCcugCUGCGa -3' miRNA: 3'- gCUCUGGAGGcUCCUgcUGaa-GAUGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 22593 | 0.68 | 0.971879 |
Target: 5'- gGAGGCCacggugcuggacacgUCCGGGGagugcaugcGCGAgaUCUGCGa -3' miRNA: 3'- gCUCUGG---------------AGGCUCC---------UGCUgaAGAUGC- -5' |
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8998 | 5' | -53.6 | NC_002512.2 | + | 87834 | 0.69 | 0.944482 |
Target: 5'- aGGGGCCgaggcgaaaugcgCCGAGG-CGAgCUUCUugGu -3' miRNA: 3'- gCUCUGGa------------GGCUCCuGCU-GAAGAugC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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