miRNA display CGI


Results 41 - 60 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8999 3' -55.4 NC_002512.2 + 6396 0.72 0.719363
Target:  5'- cGCGACGggcagggagGCgGCGGCGGCGcuggGGAAGGc -3'
miRNA:   3'- aCGCUGCa--------CG-CGCUGCCGU----UCUUCUc -5'
8999 3' -55.4 NC_002512.2 + 189894 0.72 0.719363
Target:  5'- gGCGGCG-GCGagGACGGCGGcGAGGAc -3'
miRNA:   3'- aCGCUGCaCGCg-CUGCCGUU-CUUCUc -5'
8999 3' -55.4 NC_002512.2 + 202512 0.72 0.729013
Target:  5'- gGCGGCGgagGCggagGCGGCGGCGGGGgcGGAc -3'
miRNA:   3'- aCGCUGCa--CG----CGCUGCCGUUCU--UCUc -5'
8999 3' -55.4 NC_002512.2 + 210256 0.72 0.729013
Target:  5'- cGCuGGCGUGCGC--CGGCucgGGGGAGAGg -3'
miRNA:   3'- aCG-CUGCACGCGcuGCCG---UUCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 149429 0.72 0.729013
Target:  5'- cGCGGCGggggcggGCGCGGgGGgAgaGGAAGGGg -3'
miRNA:   3'- aCGCUGCa------CGCGCUgCCgU--UCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 133812 0.72 0.738584
Target:  5'- cGCGcCGgGUGCGGgGGgAAGAGGAGg -3'
miRNA:   3'- aCGCuGCaCGCGCUgCCgUUCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 127845 0.72 0.748066
Target:  5'- gGCGGCGUccGcCGCGAagcUGGaCAGGGAGAGg -3'
miRNA:   3'- aCGCUGCA--C-GCGCU---GCC-GUUCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 82041 0.72 0.748066
Target:  5'- cGCGcCG-GCgGCGgucGCGGCGGGAGGAGu -3'
miRNA:   3'- aCGCuGCaCG-CGC---UGCCGUUCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 94057 0.72 0.757451
Target:  5'- gGCGACGacggGCGCGGCGGgAAcGGGAc -3'
miRNA:   3'- aCGCUGCa---CGCGCUGCCgUUcUUCUc -5'
8999 3' -55.4 NC_002512.2 + 156518 0.72 0.76673
Target:  5'- gGCGGCGggGCGCGgggguccgGCGGCGGGAAc-- -3'
miRNA:   3'- aCGCUGCa-CGCGC--------UGCCGUUCUUcuc -5'
8999 3' -55.4 NC_002512.2 + 228214 0.72 0.76673
Target:  5'- cGCGGuCGaggccggGCGaGACGGCGGGAAGGGc -3'
miRNA:   3'- aCGCU-GCa------CGCgCUGCCGUUCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 155384 0.71 0.775895
Target:  5'- gGCGGCG-GCGcCGGCGGgCGaucgcGGAGGGGa -3'
miRNA:   3'- aCGCUGCaCGC-GCUGCC-GU-----UCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 185227 0.71 0.775896
Target:  5'- cGCGuCGUGgaaCGCGugGGCGAGAGc-- -3'
miRNA:   3'- aCGCuGCAC---GCGCugCCGUUCUUcuc -5'
8999 3' -55.4 NC_002512.2 + 136081 0.71 0.782239
Target:  5'- gGCGGCGUuccugcugcugcucGCGCuGGCGGCGgccacagcgacgGGGAGGGa -3'
miRNA:   3'- aCGCUGCA--------------CGCG-CUGCCGU------------UCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 127267 0.71 0.78404
Target:  5'- gGCGACG-GCGUucccccgggcguuGGCGGCGgccgacgaGGAGGAGa -3'
miRNA:   3'- aCGCUGCaCGCG-------------CUGCCGU--------UCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 219569 0.71 0.784938
Target:  5'- gGgGACGUGUGCGACGGCu------- -3'
miRNA:   3'- aCgCUGCACGCGCUGCCGuucuucuc -5'
8999 3' -55.4 NC_002512.2 + 97098 0.71 0.79385
Target:  5'- gGaCGGCGgGgGCGACGGCAAGcGGGu -3'
miRNA:   3'- aC-GCUGCaCgCGCUGCCGUUCuUCUc -5'
8999 3' -55.4 NC_002512.2 + 108346 0.71 0.79385
Target:  5'- cGCGGCaUGCGCGgacggacggGCGGguGGggGAu -3'
miRNA:   3'- aCGCUGcACGCGC---------UGCCguUCuuCUc -5'
8999 3' -55.4 NC_002512.2 + 207608 0.71 0.79385
Target:  5'- gGCGGCGgcUGCuGCGGCGGCGAGu---- -3'
miRNA:   3'- aCGCUGC--ACG-CGCUGCCGUUCuucuc -5'
8999 3' -55.4 NC_002512.2 + 103242 0.71 0.79385
Target:  5'- cGuCGACGgccGCgGCGAgGGCAuGGAGGAGg -3'
miRNA:   3'- aC-GCUGCa--CG-CGCUgCCGU-UCUUCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.