miRNA display CGI


Results 21 - 40 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8999 3' -55.4 NC_002512.2 + 223095 0.75 0.600365
Target:  5'- cGCGGC-UGCGuCGACGGgGAGggGGa -3'
miRNA:   3'- aCGCUGcACGC-GCUGCCgUUCuuCUc -5'
8999 3' -55.4 NC_002512.2 + 152813 0.75 0.600365
Target:  5'- gGCGACG-GCG-GGCGGCGAGcAGGAu -3'
miRNA:   3'- aCGCUGCaCGCgCUGCCGUUC-UUCUc -5'
8999 3' -55.4 NC_002512.2 + 33647 0.74 0.610333
Target:  5'- cGCGcGCGgGCGCGGCGGaCAGGGucucAGAGg -3'
miRNA:   3'- aCGC-UGCaCGCGCUGCC-GUUCU----UCUC- -5'
8999 3' -55.4 NC_002512.2 + 4870 0.74 0.620315
Target:  5'- cGCcGCGUGCgGCGcCGGCuGGAGGAGc -3'
miRNA:   3'- aCGcUGCACG-CGCuGCCGuUCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 91393 0.74 0.650287
Target:  5'- cUGCGGCGcUGCGUGGCGGCcaugauGAcGAGc -3'
miRNA:   3'- -ACGCUGC-ACGCGCUGCCGuu----CUuCUC- -5'
8999 3' -55.4 NC_002512.2 + 57885 0.74 0.650287
Target:  5'- gGCGACG-GCgGCGACGGCGAcGgcGAu -3'
miRNA:   3'- aCGCUGCaCG-CGCUGCCGUU-CuuCUc -5'
8999 3' -55.4 NC_002512.2 + 110837 0.74 0.663248
Target:  5'- gGCaGACGUGCGCggcgaacaggcccacGACGGCcggcccguccaccAGGAGGAGg -3'
miRNA:   3'- aCG-CUGCACGCG---------------CUGCCG-------------UUCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 44400 0.74 0.664244
Target:  5'- -cCGGCGUGCgccaugaccuGCGGCGGCAGGAccacggcgaaggagcAGAGg -3'
miRNA:   3'- acGCUGCACG----------CGCUGCCGUUCU---------------UCUC- -5'
8999 3' -55.4 NC_002512.2 + 40651 0.73 0.670212
Target:  5'- gGUGACGUcCGCGACGGCGAcGGAcGGa -3'
miRNA:   3'- aCGCUGCAcGCGCUGCCGUU-CUUcUC- -5'
8999 3' -55.4 NC_002512.2 + 131616 0.73 0.670212
Target:  5'- gGgGACGagcgGCGCGGgGGCAAGGAcGGGa -3'
miRNA:   3'- aCgCUGCa---CGCGCUgCCGUUCUU-CUC- -5'
8999 3' -55.4 NC_002512.2 + 45526 0.73 0.670212
Target:  5'- cGCGGCGgGCgGCGGCGGCGAcuuGGGGu -3'
miRNA:   3'- aCGCUGCaCG-CGCUGCCGUUcu-UCUC- -5'
8999 3' -55.4 NC_002512.2 + 130178 0.73 0.680134
Target:  5'- cGCGACG-GCGCGGacgaGGaCGAGGAcGAGg -3'
miRNA:   3'- aCGCUGCaCGCGCUg---CC-GUUCUU-CUC- -5'
8999 3' -55.4 NC_002512.2 + 118958 0.73 0.690019
Target:  5'- aGCGugG-G-GCGGCGGCGGGAGGuGc -3'
miRNA:   3'- aCGCugCaCgCGCUGCCGUUCUUCuC- -5'
8999 3' -55.4 NC_002512.2 + 98859 0.73 0.690019
Target:  5'- cGUGACGUGaCGCG-CGGCGAGGc--- -3'
miRNA:   3'- aCGCUGCAC-GCGCuGCCGUUCUucuc -5'
8999 3' -55.4 NC_002512.2 + 140927 0.73 0.698875
Target:  5'- cGCGGCGgcuCGgGACGGCGacgaggcGGAAGGGg -3'
miRNA:   3'- aCGCUGCac-GCgCUGCCGU-------UCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 149714 0.73 0.699857
Target:  5'- aGCGGCagcaGCGaCGACGGCGAcagcGAGGAGg -3'
miRNA:   3'- aCGCUGca--CGC-GCUGCCGUU----CUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 35276 0.73 0.709641
Target:  5'- gGCGACG-GcCGCGGCGGCGgAGgcGAu -3'
miRNA:   3'- aCGCUGCaC-GCGCUGCCGU-UCuuCUc -5'
8999 3' -55.4 NC_002512.2 + 226717 0.73 0.709641
Target:  5'- aGCGACGggaggccgcggGCGaCGACGGCGGGAccGGGc -3'
miRNA:   3'- aCGCUGCa----------CGC-GCUGCCGUUCU--UCUc -5'
8999 3' -55.4 NC_002512.2 + 103160 0.73 0.709641
Target:  5'- gGCGACGcGcCGCGccCGGCGAGGAcGAGg -3'
miRNA:   3'- aCGCUGCaC-GCGCu-GCCGUUCUU-CUC- -5'
8999 3' -55.4 NC_002512.2 + 228998 0.72 0.719363
Target:  5'- cGUGGCG-GCGgGACuaGCGGGAGGAGg -3'
miRNA:   3'- aCGCUGCaCGCgCUGc-CGUUCUUCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.