miRNA display CGI


Results 1 - 20 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8999 3' -55.4 NC_002512.2 + 184327 1.09 0.004835
Target:  5'- cUGCGACGUGCGCGACGGCAAGAAGAGg -3'
miRNA:   3'- -ACGCUGCACGCGCUGCCGUUCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 170776 0.83 0.217261
Target:  5'- cGCGACGgGCGCGaucggcgcgacgacgGCGGCGAGggGAGc -3'
miRNA:   3'- aCGCUGCaCGCGC---------------UGCCGUUCuuCUC- -5'
8999 3' -55.4 NC_002512.2 + 64587 0.81 0.298432
Target:  5'- aGCGACGagcgGCGCG-CGGCGAGAuGGAGa -3'
miRNA:   3'- aCGCUGCa---CGCGCuGCCGUUCU-UCUC- -5'
8999 3' -55.4 NC_002512.2 + 195020 0.8 0.333691
Target:  5'- gGCGGCG-GCGaCGACGGCGAcGAAGAa -3'
miRNA:   3'- aCGCUGCaCGC-GCUGCCGUU-CUUCUc -5'
8999 3' -55.4 NC_002512.2 + 153395 0.8 0.333691
Target:  5'- aGCGACGUggaGCGCGGCGGC-GGucGAGg -3'
miRNA:   3'- aCGCUGCA---CGCGCUGCCGuUCuuCUC- -5'
8999 3' -55.4 NC_002512.2 + 60 0.79 0.371909
Target:  5'- uUGCGGCGUcggucgcggGCGCGaggaggcgagagGCGGCGGGggGAGa -3'
miRNA:   3'- -ACGCUGCA---------CGCGC------------UGCCGUUCuuCUC- -5'
8999 3' -55.4 NC_002512.2 + 229464 0.79 0.371909
Target:  5'- uUGCGGCGUcggucgcggGCGCGaggaggcgagagGCGGCGGGggGAGa -3'
miRNA:   3'- -ACGCUGCA---------CGCGC------------UGCCGUUCuuCUC- -5'
8999 3' -55.4 NC_002512.2 + 154814 0.79 0.379902
Target:  5'- aGCGACGgagGCaGCGGCGGCGgcaguagugucGGAGGGGg -3'
miRNA:   3'- aCGCUGCa--CG-CGCUGCCGU-----------UCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 100067 0.79 0.388008
Target:  5'- gGCGGCG-GCGcCGACGaCGAGAAGAGg -3'
miRNA:   3'- aCGCUGCaCGC-GCUGCcGUUCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 157171 0.79 0.388008
Target:  5'- gGCGGCGUGgGCGGCGGCGcGAcGAu -3'
miRNA:   3'- aCGCUGCACgCGCUGCCGUuCUuCUc -5'
8999 3' -55.4 NC_002512.2 + 14051 0.78 0.438961
Target:  5'- gGCGGCG-GCGCGuucCGGCcGGGAGGGg -3'
miRNA:   3'- aCGCUGCaCGCGCu--GCCGuUCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 196273 0.77 0.465829
Target:  5'- cGCGGCGgaaGCGCgGACGGCAucuuGAAGAc -3'
miRNA:   3'- aCGCUGCa--CGCG-CUGCCGUu---CUUCUc -5'
8999 3' -55.4 NC_002512.2 + 148466 0.77 0.484207
Target:  5'- cGgGACGgagcCGCGACGGCGGGGAGGa -3'
miRNA:   3'- aCgCUGCac--GCGCUGCCGUUCUUCUc -5'
8999 3' -55.4 NC_002512.2 + 13744 0.76 0.502926
Target:  5'- cGCGACGccgGUGUGAgCGGgAAGGAGAGg -3'
miRNA:   3'- aCGCUGCa--CGCGCU-GCCgUUCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 74627 0.76 0.541251
Target:  5'- cGCGAgacCGccGCGCGACGGCccGGggGAGa -3'
miRNA:   3'- aCGCU---GCa-CGCGCUGCCGu-UCuuCUC- -5'
8999 3' -55.4 NC_002512.2 + 4570 0.75 0.550991
Target:  5'- cUGCGGCGUcUGgGGCGGC-GGAGGAGg -3'
miRNA:   3'- -ACGCUGCAcGCgCUGCCGuUCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 103057 0.75 0.580503
Target:  5'- cGCGACGaGCGCGACGaCGGGAcggacuacgGGAGg -3'
miRNA:   3'- aCGCUGCaCGCGCUGCcGUUCU---------UCUC- -5'
8999 3' -55.4 NC_002512.2 + 127271 0.75 0.580503
Target:  5'- gGUGcUGUGCGacuccacgGACGGCGAGGAGAGg -3'
miRNA:   3'- aCGCuGCACGCg-------CUGCCGUUCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 153986 0.75 0.58645
Target:  5'- gGCGGCGgcaaacagaaagaGCGaCGcCGGCAGGAGGAGg -3'
miRNA:   3'- aCGCUGCa------------CGC-GCuGCCGUUCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 152813 0.75 0.600365
Target:  5'- gGCGACG-GCG-GGCGGCGAGcAGGAu -3'
miRNA:   3'- aCGCUGCaCGCgCUGCCGUUC-UUCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.