miRNA display CGI


Results 1 - 20 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8999 3' -55.4 NC_002512.2 + 63445 0.66 0.962682
Target:  5'- gGCGcCGU-CGCccccggagGACGGCgGGGAAGAGg -3'
miRNA:   3'- aCGCuGCAcGCG--------CUGCCG-UUCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 139268 0.66 0.955594
Target:  5'- cGCGcCGcccggcGCGCGGgGGCgAAGggGGGc -3'
miRNA:   3'- aCGCuGCa-----CGCGCUgCCG-UUCuuCUC- -5'
8999 3' -55.4 NC_002512.2 + 85568 0.66 0.962682
Target:  5'- gGCG-CGggaGCGgGAgCGGCcGGGAGAGc -3'
miRNA:   3'- aCGCuGCa--CGCgCU-GCCGuUCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 101520 0.66 0.965598
Target:  5'- gGCGACGgggaggGCGagggggaaggagaCGGCGGCGGcGggGAc -3'
miRNA:   3'- aCGCUGCa-----CGC-------------GCUGCCGUU-CuuCUc -5'
8999 3' -55.4 NC_002512.2 + 10482 0.66 0.955594
Target:  5'- gGCGugG-GCGUcGCGGCGGGccGAc -3'
miRNA:   3'- aCGCugCaCGCGcUGCCGUUCuuCUc -5'
8999 3' -55.4 NC_002512.2 + 81255 0.66 0.959243
Target:  5'- gGCGGCcUGCGguugaggucgaCGuACGGCAGGggGGc -3'
miRNA:   3'- aCGCUGcACGC-----------GC-UGCCGUUCuuCUc -5'
8999 3' -55.4 NC_002512.2 + 52653 0.66 0.958888
Target:  5'- gGCGACGgagcggGCGCugcugcuGGCGGUGGuGAAGAa -3'
miRNA:   3'- aCGCUGCa-----CGCG-------CUGCCGUU-CUUCUc -5'
8999 3' -55.4 NC_002512.2 + 14647 0.66 0.955594
Target:  5'- gGCGGCGUaGC-UGugGGCGAGcAGGu -3'
miRNA:   3'- aCGCUGCA-CGcGCugCCGUUCuUCUc -5'
8999 3' -55.4 NC_002512.2 + 83449 0.66 0.965282
Target:  5'- gUGCGcccggacgaaguCGUGCGgGGCGGCGcgcagcuucgGGggGAc -3'
miRNA:   3'- -ACGCu-----------GCACGCgCUGCCGU----------UCuuCUc -5'
8999 3' -55.4 NC_002512.2 + 20133 0.66 0.955594
Target:  5'- cGCGGa--GCGCGACGGCuguccguaccGGAAGGu -3'
miRNA:   3'- aCGCUgcaCGCGCUGCCGu---------UCUUCUc -5'
8999 3' -55.4 NC_002512.2 + 51283 0.66 0.955594
Target:  5'- cGCGGCGaccgaGUcgGCGGCGGCcagacuGAAGAGc -3'
miRNA:   3'- aCGCUGCa----CG--CGCUGCCGuu----CUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 126219 0.66 0.965912
Target:  5'- cUGCGACGUcgagGCGCucgUGGCcgccGAGGAGGGc -3'
miRNA:   3'- -ACGCUGCA----CGCGcu-GCCG----UUCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 85271 0.66 0.965912
Target:  5'- cGCcACGUccaGCGCGGCGcggaccucguGCGAGggGAu -3'
miRNA:   3'- aCGcUGCA---CGCGCUGC----------CGUUCuuCUc -5'
8999 3' -55.4 NC_002512.2 + 19857 0.66 0.965912
Target:  5'- aGCGGaagGCGCGACGGUAcGGcuGGAc -3'
miRNA:   3'- aCGCUgcaCGCGCUGCCGUuCU--UCUc -5'
8999 3' -55.4 NC_002512.2 + 80810 0.66 0.959243
Target:  5'- aGCG-CGcGCGCGccuCGGCGucggcGGAGGGGc -3'
miRNA:   3'- aCGCuGCaCGCGCu--GCCGU-----UCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 88701 0.66 0.965912
Target:  5'- cGgGACGUuCGCG-CGGagGGGAAGGGa -3'
miRNA:   3'- aCgCUGCAcGCGCuGCCg-UUCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 141257 0.66 0.962682
Target:  5'- -cCGGCGcaaCGUGugGcGCAAGAAGAGc -3'
miRNA:   3'- acGCUGCac-GCGCugC-CGUUCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 89420 0.66 0.959243
Target:  5'- cGCGAgGcgGCGUGACGG--AGAGGuGg -3'
miRNA:   3'- aCGCUgCa-CGCGCUGCCguUCUUCuC- -5'
8999 3' -55.4 NC_002512.2 + 130271 0.66 0.965912
Target:  5'- gGCGACGacCGCGACGaGCGcGggGc- -3'
miRNA:   3'- aCGCUGCacGCGCUGC-CGUuCuuCuc -5'
8999 3' -55.4 NC_002512.2 + 109013 0.66 0.957809
Target:  5'- gGCGGCGUcguccugcggaccCGCGGCGcGUucGAGggGAGg -3'
miRNA:   3'- aCGCUGCAc------------GCGCUGC-CG--UUCuuCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.