miRNA display CGI


Results 1 - 20 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8999 3' -55.4 NC_002512.2 + 46 0.71 0.811248
Target:  5'- cGgGAUGaGCGgGAUGaGCGGGAGGAGg -3'
miRNA:   3'- aCgCUGCaCGCgCUGC-CGUUCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 60 0.79 0.371909
Target:  5'- uUGCGGCGUcggucgcggGCGCGaggaggcgagagGCGGCGGGggGAGa -3'
miRNA:   3'- -ACGCUGCA---------CGCGC------------UGCCGUUCuuCUC- -5'
8999 3' -55.4 NC_002512.2 + 145 0.67 0.951728
Target:  5'- gGCGGuCG-GCGgaggaGGCGGCAGGAGGcGg -3'
miRNA:   3'- aCGCU-GCaCGCg----CUGCCGUUCUUCuC- -5'
8999 3' -55.4 NC_002512.2 + 159 0.67 0.942001
Target:  5'- cGcCGGCGgaggaGCGCGcgccgggagggacgGgGGCGAGAAGGGg -3'
miRNA:   3'- aC-GCUGCa----CGCGC--------------UgCCGUUCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 3062 0.68 0.906847
Target:  5'- gGCGGCG-GaCGCGGCGGCGGcGgcGGc -3'
miRNA:   3'- aCGCUGCaC-GCGCUGCCGUU-CuuCUc -5'
8999 3' -55.4 NC_002512.2 + 4570 0.75 0.550991
Target:  5'- cUGCGGCGUcUGgGGCGGC-GGAGGAGg -3'
miRNA:   3'- -ACGCUGCAcGCgCUGCCGuUCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 4743 0.66 0.962682
Target:  5'- aUGCGuCGU---CGACGGC-GGAAGAGg -3'
miRNA:   3'- -ACGCuGCAcgcGCUGCCGuUCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 4870 0.74 0.620315
Target:  5'- cGCcGCGUGCgGCGcCGGCuGGAGGAGc -3'
miRNA:   3'- aCGcUGCACG-CGCuGCCGuUCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 4978 0.67 0.93834
Target:  5'- cGCGACGgagGUGaGACGGCGAacgggucGAAGGc -3'
miRNA:   3'- aCGCUGCa--CGCgCUGCCGUU-------CUUCUc -5'
8999 3' -55.4 NC_002512.2 + 5076 0.67 0.951728
Target:  5'- cGCGGCGUuggucgucgucGCcgGCGuCGGCGcgggcGGGAGAGa -3'
miRNA:   3'- aCGCUGCA-----------CG--CGCuGCCGU-----UCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 6396 0.72 0.719363
Target:  5'- cGCGACGggcagggagGCgGCGGCGGCGcuggGGAAGGc -3'
miRNA:   3'- aCGCUGCa--------CG-CGCUGCCGU----UCUUCUc -5'
8999 3' -55.4 NC_002512.2 + 7315 0.69 0.881058
Target:  5'- cGCGACG-GCGgGccGCGGCGGGAcGGu -3'
miRNA:   3'- aCGCUGCaCGCgC--UGCCGUUCUuCUc -5'
8999 3' -55.4 NC_002512.2 + 7366 0.68 0.912741
Target:  5'- cGCGACGgcgGcCGCGGCgGGCGgccaggcgcAGAAGGc -3'
miRNA:   3'- aCGCUGCa--C-GCGCUG-CCGU---------UCUUCUc -5'
8999 3' -55.4 NC_002512.2 + 10482 0.66 0.955594
Target:  5'- gGCGugG-GCGUcGCGGCGGGccGAc -3'
miRNA:   3'- aCGCugCaCGCGcUGCCGUUCuuCUc -5'
8999 3' -55.4 NC_002512.2 + 11331 0.69 0.89439
Target:  5'- cGCGACGgacGC-CGGCGGgAGGcGAGAGc -3'
miRNA:   3'- aCGCUGCa--CGcGCUGCCgUUC-UUCUC- -5'
8999 3' -55.4 NC_002512.2 + 13744 0.76 0.502926
Target:  5'- cGCGACGccgGUGUGAgCGGgAAGGAGAGg -3'
miRNA:   3'- aCGCUGCa--CGCGCU-GCCgUUCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 14051 0.78 0.438961
Target:  5'- gGCGGCG-GCGCGuucCGGCcGGGAGGGg -3'
miRNA:   3'- aCGCUGCaCGCGCu--GCCGuUCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 14518 0.68 0.900729
Target:  5'- gGCGACGgcgaagcGCGCGACGGagucGAcGGAGc -3'
miRNA:   3'- aCGCUGCa------CGCGCUGCCguu-CU-UCUC- -5'
8999 3' -55.4 NC_002512.2 + 14647 0.66 0.955594
Target:  5'- gGCGGCGUaGC-UGugGGCGAGcAGGu -3'
miRNA:   3'- aCGCUGCA-CGcGCugCCGUUCuUCUc -5'
8999 3' -55.4 NC_002512.2 + 14784 0.67 0.934048
Target:  5'- gGCGGuCG-GcCGCGGCGGCGAcGAAGu- -3'
miRNA:   3'- aCGCU-GCaC-GCGCUGCCGUU-CUUCuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.