Results 1 - 20 of 244 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8999 | 3' | -55.4 | NC_002512.2 | + | 60 | 0.79 | 0.371909 |
Target: 5'- uUGCGGCGUcggucgcggGCGCGaggaggcgagagGCGGCGGGggGAGa -3' miRNA: 3'- -ACGCUGCA---------CGCGC------------UGCCGUUCuuCUC- -5' |
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8999 | 3' | -55.4 | NC_002512.2 | + | 40651 | 0.73 | 0.670212 |
Target: 5'- gGUGACGUcCGCGACGGCGAcGGAcGGa -3' miRNA: 3'- aCGCUGCAcGCGCUGCCGUU-CUUcUC- -5' |
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8999 | 3' | -55.4 | NC_002512.2 | + | 131616 | 0.73 | 0.670212 |
Target: 5'- gGgGACGagcgGCGCGGgGGCAAGGAcGGGa -3' miRNA: 3'- aCgCUGCa---CGCGCUgCCGUUCUU-CUC- -5' |
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8999 | 3' | -55.4 | NC_002512.2 | + | 44400 | 0.74 | 0.664244 |
Target: 5'- -cCGGCGUGCgccaugaccuGCGGCGGCAGGAccacggcgaaggagcAGAGg -3' miRNA: 3'- acGCUGCACG----------CGCUGCCGUUCU---------------UCUC- -5' |
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8999 | 3' | -55.4 | NC_002512.2 | + | 57885 | 0.74 | 0.650287 |
Target: 5'- gGCGACG-GCgGCGACGGCGAcGgcGAu -3' miRNA: 3'- aCGCUGCaCG-CGCUGCCGUU-CuuCUc -5' |
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8999 | 3' | -55.4 | NC_002512.2 | + | 4870 | 0.74 | 0.620315 |
Target: 5'- cGCcGCGUGCgGCGcCGGCuGGAGGAGc -3' miRNA: 3'- aCGcUGCACG-CGCuGCCGuUCUUCUC- -5' |
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8999 | 3' | -55.4 | NC_002512.2 | + | 33647 | 0.74 | 0.610333 |
Target: 5'- cGCGcGCGgGCGCGGCGGaCAGGGucucAGAGg -3' miRNA: 3'- aCGC-UGCaCGCGCUGCC-GUUCU----UCUC- -5' |
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8999 | 3' | -55.4 | NC_002512.2 | + | 152813 | 0.75 | 0.600365 |
Target: 5'- gGCGACG-GCG-GGCGGCGAGcAGGAu -3' miRNA: 3'- aCGCUGCaCGCgCUGCCGUUC-UUCUc -5' |
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8999 | 3' | -55.4 | NC_002512.2 | + | 153986 | 0.75 | 0.58645 |
Target: 5'- gGCGGCGgcaaacagaaagaGCGaCGcCGGCAGGAGGAGg -3' miRNA: 3'- aCGCUGCa------------CGC-GCuGCCGUUCUUCUC- -5' |
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8999 | 3' | -55.4 | NC_002512.2 | + | 103057 | 0.75 | 0.580503 |
Target: 5'- cGCGACGaGCGCGACGaCGGGAcggacuacgGGAGg -3' miRNA: 3'- aCGCUGCaCGCGCUGCcGUUCU---------UCUC- -5' |
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8999 | 3' | -55.4 | NC_002512.2 | + | 127271 | 0.75 | 0.580503 |
Target: 5'- gGUGcUGUGCGacuccacgGACGGCGAGGAGAGg -3' miRNA: 3'- aCGCuGCACGCg-------CUGCCGUUCUUCUC- -5' |
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8999 | 3' | -55.4 | NC_002512.2 | + | 4570 | 0.75 | 0.550991 |
Target: 5'- cUGCGGCGUcUGgGGCGGC-GGAGGAGg -3' miRNA: 3'- -ACGCUGCAcGCgCUGCCGuUCUUCUC- -5' |
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8999 | 3' | -55.4 | NC_002512.2 | + | 74627 | 0.76 | 0.541251 |
Target: 5'- cGCGAgacCGccGCGCGACGGCccGGggGAGa -3' miRNA: 3'- aCGCU---GCa-CGCGCUGCCGu-UCuuCUC- -5' |
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8999 | 3' | -55.4 | NC_002512.2 | + | 13744 | 0.76 | 0.502926 |
Target: 5'- cGCGACGccgGUGUGAgCGGgAAGGAGAGg -3' miRNA: 3'- aCGCUGCa--CGCGCU-GCCgUUCUUCUC- -5' |
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8999 | 3' | -55.4 | NC_002512.2 | + | 196273 | 0.77 | 0.465829 |
Target: 5'- cGCGGCGgaaGCGCgGACGGCAucuuGAAGAc -3' miRNA: 3'- aCGCUGCa--CGCG-CUGCCGUu---CUUCUc -5' |
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8999 | 3' | -55.4 | NC_002512.2 | + | 14051 | 0.78 | 0.438961 |
Target: 5'- gGCGGCG-GCGCGuucCGGCcGGGAGGGg -3' miRNA: 3'- aCGCUGCaCGCGCu--GCCGuUCUUCUC- -5' |
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8999 | 3' | -55.4 | NC_002512.2 | + | 100067 | 0.79 | 0.388008 |
Target: 5'- gGCGGCG-GCGcCGACGaCGAGAAGAGg -3' miRNA: 3'- aCGCUGCaCGC-GCUGCcGUUCUUCUC- -5' |
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8999 | 3' | -55.4 | NC_002512.2 | + | 154814 | 0.79 | 0.379902 |
Target: 5'- aGCGACGgagGCaGCGGCGGCGgcaguagugucGGAGGGGg -3' miRNA: 3'- aCGCUGCa--CG-CGCUGCCGU-----------UCUUCUC- -5' |
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8999 | 3' | -55.4 | NC_002512.2 | + | 229464 | 0.79 | 0.371909 |
Target: 5'- uUGCGGCGUcggucgcggGCGCGaggaggcgagagGCGGCGGGggGAGa -3' miRNA: 3'- -ACGCUGCA---------CGCGC------------UGCCGUUCuuCUC- -5' |
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8999 | 3' | -55.4 | NC_002512.2 | + | 64587 | 0.81 | 0.298432 |
Target: 5'- aGCGACGagcgGCGCG-CGGCGAGAuGGAGa -3' miRNA: 3'- aCGCUGCa---CGCGCuGCCGUUCU-UCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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