miRNA display CGI


Results 1 - 20 of 244 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8999 3' -55.4 NC_002512.2 + 197330 0.66 0.971773
Target:  5'- cGCGGC--GCcCGGCGGCugGAGAAGAu -3'
miRNA:   3'- aCGCUGcaCGcGCUGCCG--UUCUUCUc -5'
8999 3' -55.4 NC_002512.2 + 125136 0.66 0.962682
Target:  5'- gGaCGACG-GCGacgagGACGGCGAcgcGGAGAGc -3'
miRNA:   3'- aC-GCUGCaCGCg----CUGCCGUU---CUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 112518 0.66 0.962682
Target:  5'- aGgGACGaguUGCuguugcagacgGCGGCgGGCAGGAAGAa -3'
miRNA:   3'- aCgCUGC---ACG-----------CGCUG-CCGUUCUUCUc -5'
8999 3' -55.4 NC_002512.2 + 184327 1.09 0.004835
Target:  5'- cUGCGACGUGCGCGACGGCAAGAAGAGg -3'
miRNA:   3'- -ACGCUGCACGCGCUGCCGUUCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 123540 0.66 0.971773
Target:  5'- gGUGGCGagcucGCGgGACGaGCGAccGggGAGa -3'
miRNA:   3'- aCGCUGCa----CGCgCUGC-CGUU--CuuCUC- -5'
8999 3' -55.4 NC_002512.2 + 71290 0.66 0.971773
Target:  5'- uUGCG-CGUGCG-GuucCGG-AAGAAGAGg -3'
miRNA:   3'- -ACGCuGCACGCgCu--GCCgUUCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 100063 0.66 0.971498
Target:  5'- cGCGACGgggGcCGCGggccggggacggaGCGGUcaggggaacaggGAGAAGGGg -3'
miRNA:   3'- aCGCUGCa--C-GCGC-------------UGCCG------------UUCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 137256 0.66 0.968941
Target:  5'- gGCGGCGaGCGCuGCGGgAucGAGGAa -3'
miRNA:   3'- aCGCUGCaCGCGcUGCCgUu-CUUCUc -5'
8999 3' -55.4 NC_002512.2 + 157030 0.66 0.965912
Target:  5'- gGCGACGcgGCccggaGCGAggacccCGGCAAGgcGGGc -3'
miRNA:   3'- aCGCUGCa-CG-----CGCU------GCCGUUCuuCUC- -5'
8999 3' -55.4 NC_002512.2 + 4743 0.66 0.962682
Target:  5'- aUGCGuCGU---CGACGGC-GGAAGAGg -3'
miRNA:   3'- -ACGCuGCAcgcGCUGCCGuUCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 198011 0.66 0.965912
Target:  5'- gGCGACGgacggGgGCGagggacgcGCGcGCGAGggGAc -3'
miRNA:   3'- aCGCUGCa----CgCGC--------UGC-CGUUCuuCUc -5'
8999 3' -55.4 NC_002512.2 + 213077 0.66 0.965912
Target:  5'- cGCGggcuACGUGCucuucguCGGCGGCGAGGAcGAc -3'
miRNA:   3'- aCGC----UGCACGc------GCUGCCGUUCUU-CUc -5'
8999 3' -55.4 NC_002512.2 + 155752 0.66 0.971773
Target:  5'- cGUGGCGUGCgGCaACGGgCugAAGGAGAu -3'
miRNA:   3'- aCGCUGCACG-CGcUGCC-G--UUCUUCUc -5'
8999 3' -55.4 NC_002512.2 + 168101 0.66 0.965912
Target:  5'- gGauACGUGCGgGAgcaGGguAGGAGAGg -3'
miRNA:   3'- aCgcUGCACGCgCUg--CCguUCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 140863 0.66 0.971773
Target:  5'- cGCGGCcUGCGCGAa-GUucGAAGAa -3'
miRNA:   3'- aCGCUGcACGCGCUgcCGuuCUUCUc -5'
8999 3' -55.4 NC_002512.2 + 98633 0.66 0.968941
Target:  5'- cGUGACGaGCGaGACGG--AGggGAGu -3'
miRNA:   3'- aCGCUGCaCGCgCUGCCguUCuuCUC- -5'
8999 3' -55.4 NC_002512.2 + 148097 0.66 0.962682
Target:  5'- -cCGGCG-GCgGCGGCGGCGccgaAGAcGAGg -3'
miRNA:   3'- acGCUGCaCG-CGCUGCCGU----UCUuCUC- -5'
8999 3' -55.4 NC_002512.2 + 123844 0.66 0.962682
Target:  5'- cGUGAUcUGCGUGGCGG--AGAGGAc -3'
miRNA:   3'- aCGCUGcACGCGCUGCCguUCUUCUc -5'
8999 3' -55.4 NC_002512.2 + 154280 0.66 0.971773
Target:  5'- gUGCG-CGUGCGCaGACGcGCGcGAAa-- -3'
miRNA:   3'- -ACGCuGCACGCG-CUGC-CGUuCUUcuc -5'
8999 3' -55.4 NC_002512.2 + 35474 0.66 0.971773
Target:  5'- gGCGACGUGUaUGACGGUcgugccguGGcGGAGc -3'
miRNA:   3'- aCGCUGCACGcGCUGCCGu-------UCuUCUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.