miRNA display CGI


Results 1 - 20 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8999 3' -55.4 NC_002512.2 + 229562 0.67 0.942001
Target:  5'- cGcCGGCGgaggaGCGCGcgccgggagggacgGgGGCGAGAAGGGg -3'
miRNA:   3'- aC-GCUGCa----CGCGC--------------UgCCGUUCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 229548 0.67 0.951728
Target:  5'- gGCGGuCG-GCGgaggaGGCGGCAGGAGGcGg -3'
miRNA:   3'- aCGCU-GCaCGCg----CUGCCGUUCUUCuC- -5'
8999 3' -55.4 NC_002512.2 + 229464 0.79 0.371909
Target:  5'- uUGCGGCGUcggucgcggGCGCGaggaggcgagagGCGGCGGGggGAGa -3'
miRNA:   3'- -ACGCUGCA---------CGCGC------------UGCCGUUCuuCUC- -5'
8999 3' -55.4 NC_002512.2 + 229450 0.71 0.811248
Target:  5'- cGgGAUGaGCGgGAUGaGCGGGAGGAGg -3'
miRNA:   3'- aCgCUGCaCGCgCUGC-CGUUCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 229031 0.68 0.929063
Target:  5'- aGCgGACG-GCG-GAgcagaGGCAGGAGGAGg -3'
miRNA:   3'- aCG-CUGCaCGCgCUg----CCGUUCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 228998 0.72 0.719363
Target:  5'- cGUGGCG-GCGgGACuaGCGGGAGGAGg -3'
miRNA:   3'- aCGCUGCaCGCgCUGc-CGUUCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 228774 0.66 0.955594
Target:  5'- gGCGACcgagacgGCGgaGACGGgaGAGGAGAGg -3'
miRNA:   3'- aCGCUGca-----CGCg-CUGCCg-UUCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 228582 0.71 0.806091
Target:  5'- cGCGGuCGUGU-CGGCGGCAggcgccggaccagguGGAGGAGu -3'
miRNA:   3'- aCGCU-GCACGcGCUGCCGU---------------UCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 228266 0.67 0.951729
Target:  5'- gGCGAC-UGacCGCGGacCGGguGGGAGAGg -3'
miRNA:   3'- aCGCUGcAC--GCGCU--GCCguUCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 228214 0.72 0.76673
Target:  5'- cGCGGuCGaggccggGCGaGACGGCGGGAAGGGc -3'
miRNA:   3'- aCGCU-GCa------CGCgCUGCCGUUCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 227950 0.67 0.947644
Target:  5'- gGCGGgGgaGCGCGGgGGagccgGAGAGGAGg -3'
miRNA:   3'- aCGCUgCa-CGCGCUgCCg----UUCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 227610 0.67 0.943337
Target:  5'- aGCGGcCGgagggcggGCgGCGGCGGCGAGGucaggcgacGGAGc -3'
miRNA:   3'- aCGCU-GCa-------CG-CGCUGCCGUUCU---------UCUC- -5'
8999 3' -55.4 NC_002512.2 + 227530 0.7 0.836165
Target:  5'- -cCGGCG-GCG-GACGGgGGGAGGAGg -3'
miRNA:   3'- acGCUGCaCGCgCUGCCgUUCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 227225 0.7 0.828027
Target:  5'- gGCGGCGgaccgggagGCGCGGCGGaCGGGcGGGc -3'
miRNA:   3'- aCGCUGCa--------CGCGCUGCC-GUUCuUCUc -5'
8999 3' -55.4 NC_002512.2 + 226717 0.73 0.709641
Target:  5'- aGCGACGggaggccgcggGCGaCGACGGCGGGAccGGGc -3'
miRNA:   3'- aCGCUGCa----------CGC-GCUGCCGUUCU--UCUc -5'
8999 3' -55.4 NC_002512.2 + 226574 0.67 0.943337
Target:  5'- cGCG-UGUgGCG-GAUGGCGAGGAGGc -3'
miRNA:   3'- aCGCuGCA-CGCgCUGCCGUUCUUCUc -5'
8999 3' -55.4 NC_002512.2 + 224167 0.66 0.965912
Target:  5'- cGgGGCGgggGCGCG-CGGaGAGAgAGAGa -3'
miRNA:   3'- aCgCUGCa--CGCGCuGCCgUUCU-UCUC- -5'
8999 3' -55.4 NC_002512.2 + 223825 0.71 0.802623
Target:  5'- cGaCGACG-GCGCGuCGGaggggaAGGAGGAGg -3'
miRNA:   3'- aC-GCUGCaCGCGCuGCCg-----UUCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 223095 0.75 0.600365
Target:  5'- cGCGGC-UGCGuCGACGGgGAGggGGa -3'
miRNA:   3'- aCGCUGcACGC-GCUGCCgUUCuuCUc -5'
8999 3' -55.4 NC_002512.2 + 222318 0.7 0.844126
Target:  5'- gGCGGuacCGgagGCuGCGGCGGCGccuccaGGAGGAGg -3'
miRNA:   3'- aCGCU---GCa--CG-CGCUGCCGU------UCUUCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.