miRNA display CGI


Results 21 - 40 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8999 3' -55.4 NC_002512.2 + 17071 0.67 0.943337
Target:  5'- -cCGGCG-GCGCGgaaggagaaaACGGCGacaGGggGAGa -3'
miRNA:   3'- acGCUGCaCGCGC----------UGCCGU---UCuuCUC- -5'
8999 3' -55.4 NC_002512.2 + 17886 0.7 0.859492
Target:  5'- gGgGACGUGauagGCGGCGGCGGccccGAGGAc -3'
miRNA:   3'- aCgCUGCACg---CGCUGCCGUU----CUUCUc -5'
8999 3' -55.4 NC_002512.2 + 19857 0.66 0.965912
Target:  5'- aGCGGaagGCGCGACGGUAcGGcuGGAc -3'
miRNA:   3'- aCGCUgcaCGCGCUGCCGUuCU--UCUc -5'
8999 3' -55.4 NC_002512.2 + 20133 0.66 0.955594
Target:  5'- cGCGGa--GCGCGACGGCuguccguaccGGAAGGu -3'
miRNA:   3'- aCGCUgcaCGCGCUGCCGu---------UCUUCUc -5'
8999 3' -55.4 NC_002512.2 + 20881 0.68 0.929063
Target:  5'- -aUGGCG-GCGaCGACGG-GGGAAGAGg -3'
miRNA:   3'- acGCUGCaCGC-GCUGCCgUUCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 24282 0.66 0.968941
Target:  5'- gGCGACGgcauccCGCGggacaGCGGCGGGgcGAa -3'
miRNA:   3'- aCGCUGCac----GCGC-----UGCCGUUCuuCUc -5'
8999 3' -55.4 NC_002512.2 + 30266 0.67 0.943337
Target:  5'- cGCGGac-GCGCGGagcCGGCGccauGGAGGAGg -3'
miRNA:   3'- aCGCUgcaCGCGCU---GCCGU----UCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 31670 0.71 0.811248
Target:  5'- cGCGGCcGUG-GUGGCGGacgGGGAGGAGg -3'
miRNA:   3'- aCGCUG-CACgCGCUGCCg--UUCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 33647 0.74 0.610333
Target:  5'- cGCGcGCGgGCGCGGCGGaCAGGGucucAGAGg -3'
miRNA:   3'- aCGC-UGCaCGCGCUGCC-GUUCU----UCUC- -5'
8999 3' -55.4 NC_002512.2 + 34935 0.7 0.851904
Target:  5'- gGCGGgGUcGCgGCGACGGgGAGcGGAGc -3'
miRNA:   3'- aCGCUgCA-CG-CGCUGCCgUUCuUCUC- -5'
8999 3' -55.4 NC_002512.2 + 35276 0.73 0.709641
Target:  5'- gGCGACG-GcCGCGGCGGCGgAGgcGAu -3'
miRNA:   3'- aCGCUGCaC-GCGCUGCCGU-UCuuCUc -5'
8999 3' -55.4 NC_002512.2 + 35474 0.66 0.971773
Target:  5'- gGCGACGUGUaUGACGGUcgugccguGGcGGAGc -3'
miRNA:   3'- aCGCUGCACGcGCUGCCGu-------UCuUCUC- -5'
8999 3' -55.4 NC_002512.2 + 39339 0.67 0.947644
Target:  5'- cGCGGCGguaCGCG-UGGCcucAGGAGAGu -3'
miRNA:   3'- aCGCUGCac-GCGCuGCCGu--UCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 40651 0.73 0.670212
Target:  5'- gGUGACGUcCGCGACGGCGAcGGAcGGa -3'
miRNA:   3'- aCGCUGCAcGCGCUGCCGUU-CUUcUC- -5'
8999 3' -55.4 NC_002512.2 + 42327 0.67 0.943337
Target:  5'- -uCGACGcGCGCGACGGacAGAucGAGa -3'
miRNA:   3'- acGCUGCaCGCGCUGCCguUCUu-CUC- -5'
8999 3' -55.4 NC_002512.2 + 43092 0.66 0.968941
Target:  5'- cGCGGCGagcaGCgGgGACGGCucGAGGGa -3'
miRNA:   3'- aCGCUGCa---CG-CgCUGCCGuuCUUCUc -5'
8999 3' -55.4 NC_002512.2 + 44185 0.68 0.906847
Target:  5'- aGCGGCGgugGuCGCGcagcgaGGCGcAGAAGAGa -3'
miRNA:   3'- aCGCUGCa--C-GCGCug----CCGU-UCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 44400 0.74 0.664244
Target:  5'- -cCGGCGUGCgccaugaccuGCGGCGGCAGGAccacggcgaaggagcAGAGg -3'
miRNA:   3'- acGCUGCACG----------CGCUGCCGUUCU---------------UCUC- -5'
8999 3' -55.4 NC_002512.2 + 45526 0.73 0.670212
Target:  5'- cGCGGCGgGCgGCGGCGGCGAcuuGGGGu -3'
miRNA:   3'- aCGCUGCaCG-CGCUGCCGUUcu-UCUC- -5'
8999 3' -55.4 NC_002512.2 + 46717 0.68 0.906847
Target:  5'- gGUGGCGUacgucaugGCgGCGGCGGCGGGGAa-- -3'
miRNA:   3'- aCGCUGCA--------CG-CGCUGCCGUUCUUcuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.