miRNA display CGI


Results 41 - 60 of 244 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8999 3' -55.4 NC_002512.2 + 48790 0.69 0.881058
Target:  5'- cGCugaGGCGgGCGUcGCGGCAcaGGGAGAGg -3'
miRNA:   3'- aCG---CUGCaCGCGcUGCCGU--UCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 49213 0.68 0.910411
Target:  5'- gGCGGCGUgugagaucuucgggGCcaccGCGGCGGCcugccgcacccuaGAGAAGAGc -3'
miRNA:   3'- aCGCUGCA--------------CG----CGCUGCCG-------------UUCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 51283 0.66 0.955594
Target:  5'- cGCGGCGaccgaGUcgGCGGCGGCcagacuGAAGAGc -3'
miRNA:   3'- aCGCUGCa----CG--CGCUGCCGuu----CUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 52653 0.66 0.958888
Target:  5'- gGCGACGgagcggGCGCugcugcuGGCGGUGGuGAAGAa -3'
miRNA:   3'- aCGCUGCa-----CGCG-------CUGCCGUU-CUUCUc -5'
8999 3' -55.4 NC_002512.2 + 54402 0.68 0.912162
Target:  5'- -aCGACGUGCGgaacguccugGACGGCcugcuggGGGAAGAGg -3'
miRNA:   3'- acGCUGCACGCg---------CUGCCG-------UUCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 56374 0.68 0.912741
Target:  5'- --gGACGgaucgGCG-GACGGCGGGgcGAGg -3'
miRNA:   3'- acgCUGCa----CGCgCUGCCGUUCuuCUC- -5'
8999 3' -55.4 NC_002512.2 + 57885 0.74 0.650287
Target:  5'- gGCGACG-GCgGCGACGGCGAcGgcGAu -3'
miRNA:   3'- aCGCUGCaCG-CGCUGCCGUU-CuuCUc -5'
8999 3' -55.4 NC_002512.2 + 57955 0.71 0.811248
Target:  5'- gGCG-CG-GCGCGGCGGgc-GAAGAGg -3'
miRNA:   3'- aCGCuGCaCGCGCUGCCguuCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 59390 0.68 0.929063
Target:  5'- cGCGACaUGUGCGugGcGCu-GGAGAu -3'
miRNA:   3'- aCGCUGcACGCGCugC-CGuuCUUCUc -5'
8999 3' -55.4 NC_002512.2 + 59833 0.71 0.800006
Target:  5'- gGCGGCcgcgGCgGCGGCGGCcauggccauggagcAAGAGGAGg -3'
miRNA:   3'- aCGCUGca--CG-CGCUGCCG--------------UUCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 63445 0.66 0.962682
Target:  5'- gGCGcCGU-CGCccccggagGACGGCgGGGAAGAGg -3'
miRNA:   3'- aCGCuGCAcGCG--------CUGCCG-UUCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 64587 0.81 0.298432
Target:  5'- aGCGACGagcgGCGCG-CGGCGAGAuGGAGa -3'
miRNA:   3'- aCGCUGCa---CGCGCuGCCGUUCU-UCUC- -5'
8999 3' -55.4 NC_002512.2 + 65468 0.7 0.859492
Target:  5'- gGCGACcUGCaUGGCGuGCGGGAAGAa -3'
miRNA:   3'- aCGCUGcACGcGCUGC-CGUUCUUCUc -5'
8999 3' -55.4 NC_002512.2 + 71290 0.66 0.971773
Target:  5'- uUGCG-CGUGCG-GuucCGG-AAGAAGAGg -3'
miRNA:   3'- -ACGCuGCACGCgCu--GCCgUUCUUCUC- -5'
8999 3' -55.4 NC_002512.2 + 74627 0.76 0.541251
Target:  5'- cGCGAgacCGccGCGCGACGGCccGGggGAGa -3'
miRNA:   3'- aCGCU---GCa-CGCGCUGCCGu-UCuuCUC- -5'
8999 3' -55.4 NC_002512.2 + 74650 0.67 0.947644
Target:  5'- cGCGACGgGCGgGACGGCcgcGGGc--- -3'
miRNA:   3'- aCGCUGCaCGCgCUGCCGu--UCUucuc -5'
8999 3' -55.4 NC_002512.2 + 75279 0.71 0.802623
Target:  5'- gGCGACGgcgGCgGCGGCGGCGAcGAu--- -3'
miRNA:   3'- aCGCUGCa--CG-CGCUGCCGUU-CUucuc -5'
8999 3' -55.4 NC_002512.2 + 77234 0.68 0.92385
Target:  5'- gGCGaACGaGCGCccgGGCGGUGAGcGGAGa -3'
miRNA:   3'- aCGC-UGCaCGCG---CUGCCGUUCuUCUC- -5'
8999 3' -55.4 NC_002512.2 + 77512 0.67 0.938806
Target:  5'- aUGCGACG-GgGCGAcCGGUcgaucGGGAccGGAGa -3'
miRNA:   3'- -ACGCUGCaCgCGCU-GCCG-----UUCU--UCUC- -5'
8999 3' -55.4 NC_002512.2 + 79483 0.68 0.900729
Target:  5'- cGCGccCGUGgGCGGuuCGGgGAGggGGGa -3'
miRNA:   3'- aCGCu-GCACgCGCU--GCCgUUCuuCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.