Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
90 | 5' | -60.4 | AC_000006.1 | + | 26578 | 0.67 | 0.306952 |
Target: 5'- uUCCuUCGCAGuCUCcaaCGCCUgCGCCa -3' miRNA: 3'- gAGG-AGCGUC-GAGua-GUGGGgGCGGg -5' |
|||||||
90 | 5' | -60.4 | AC_000006.1 | + | 23065 | 0.66 | 0.314609 |
Target: 5'- uCUUCUCGCcGCgCGU-GCCCCCcaaacgccaGCCCa -3' miRNA: 3'- -GAGGAGCGuCGaGUAgUGGGGG---------CGGG- -5' |
|||||||
90 | 5' | -60.4 | AC_000006.1 | + | 30942 | 0.66 | 0.338439 |
Target: 5'- uCUCCUCcucaAGgaCAUCAUCCagcaccaCGCCCa -3' miRNA: 3'- -GAGGAGcg--UCgaGUAGUGGGg------GCGGG- -5' |
|||||||
90 | 5' | -60.4 | AC_000006.1 | + | 27401 | 0.66 | 0.346668 |
Target: 5'- aUUCUCGgGggacccagaGCUgGUCGCCCuuGCUCg -3' miRNA: 3'- gAGGAGCgU---------CGAgUAGUGGGggCGGG- -5' |
|||||||
90 | 5' | -60.4 | AC_000006.1 | + | 14850 | 0.66 | 0.346668 |
Target: 5'- aUCCUCu--GC-CGUcCGCCCgCGCCCa -3' miRNA: 3'- gAGGAGcguCGaGUA-GUGGGgGCGGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home