miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9001 3' -53.6 NC_002512.2 + 134975 0.69 0.953688
Target:  5'- cGGAGcuGUCUGCCCGgcgacCGggacgccuacccguUCGUCCUGGa -3'
miRNA:   3'- -CCUC--UAGAUGGGCaa---GC--------------AGCAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 118660 0.69 0.954829
Target:  5'- cGGGcgCccggccGCCCGUcaUCGUCuGUCCCGAc -3'
miRNA:   3'- cCUCuaGa-----UGGGCA--AGCAG-CAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 155200 0.69 0.954829
Target:  5'- cGAGAUCcgaCCGUUCGUCGaagggaaCCGAa -3'
miRNA:   3'- cCUCUAGaugGGCAAGCAGCag-----GGCU- -5'
9001 3' -53.6 NC_002512.2 + 3776 0.69 0.958494
Target:  5'- aGGAGAcggACCCGgagUCGgaccggagcaGUCCCGAg -3'
miRNA:   3'- -CCUCUagaUGGGCa--AGCag--------CAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 50575 0.69 0.958494
Target:  5'- -aGGAUCUGCCCGccUCGcCG-CCCGc -3'
miRNA:   3'- ccUCUAGAUGGGCa-AGCaGCaGGGCu -5'
9001 3' -53.6 NC_002512.2 + 223115 0.69 0.958494
Target:  5'- gGGGGAUCcGCgggucgaguCCGUcaUCGUCuUCCCGAu -3'
miRNA:   3'- -CCUCUAGaUG---------GGCA--AGCAGcAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 131351 0.69 0.958494
Target:  5'- aGGAGAUCccgCUGUgcaUCGUCGUcacCCCGAu -3'
miRNA:   3'- -CCUCUAGaugGGCA---AGCAGCA---GGGCU- -5'
9001 3' -53.6 NC_002512.2 + 88147 0.69 0.958494
Target:  5'- gGGAcGAUCcGCCCGUggcCGUCGUgCgGGa -3'
miRNA:   3'- -CCU-CUAGaUGGGCAa--GCAGCAgGgCU- -5'
9001 3' -53.6 NC_002512.2 + 218591 0.69 0.958494
Target:  5'- cGGAGGUCUcCCCGgggUC-UCG-CCCGc -3'
miRNA:   3'- -CCUCUAGAuGGGCa--AGcAGCaGGGCu -5'
9001 3' -53.6 NC_002512.2 + 190158 0.69 0.965201
Target:  5'- gGGuGGGUCUucaCCG-UCGUCGaCCCGAu -3'
miRNA:   3'- -CC-UCUAGAug-GGCaAGCAGCaGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 225841 0.69 0.966445
Target:  5'- gGGGGAUCgagccgcuccuguCCCGggUGUCGUCucuCCGAc -3'
miRNA:   3'- -CCUCUAGau-----------GGGCaaGCAGCAG---GGCU- -5'
9001 3' -53.6 NC_002512.2 + 210574 0.68 0.968252
Target:  5'- uGGAGAugacguggUCgACCCGUUCGUCcggagGUCCUc- -3'
miRNA:   3'- -CCUCU--------AGaUGGGCAAGCAG-----CAGGGcu -5'
9001 3' -53.6 NC_002512.2 + 25233 0.68 0.968252
Target:  5'- cGGcGAUCc-CCCGcgcgUCGcCGUCCCGGu -3'
miRNA:   3'- -CCuCUAGauGGGCa---AGCaGCAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 5826 0.68 0.968252
Target:  5'- aGAGGUCgcagacGCCCGacgaGUCGUCCCc- -3'
miRNA:   3'- cCUCUAGa-----UGGGCaag-CAGCAGGGcu -5'
9001 3' -53.6 NC_002512.2 + 145846 0.68 0.973516
Target:  5'- cGAGAUCUucaacgagcaccuGCCCGUcuucaacuUCGUCGgcgaCCUGGa -3'
miRNA:   3'- cCUCUAGA-------------UGGGCA--------AGCAGCa---GGGCU- -5'
9001 3' -53.6 NC_002512.2 + 209357 0.68 0.973774
Target:  5'- cGAGGUCggcgACCUGgcgacCGUgUGUCCCGAc -3'
miRNA:   3'- cCUCUAGa---UGGGCaa---GCA-GCAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 108936 0.68 0.976257
Target:  5'- --uGAUCUGCCUGgcggUGUCGUUCCu- -3'
miRNA:   3'- ccuCUAGAUGGGCaa--GCAGCAGGGcu -5'
9001 3' -53.6 NC_002512.2 + 155003 0.68 0.976257
Target:  5'- cGAGG---AUCCGUcgccCGUCGUCCCGGg -3'
miRNA:   3'- cCUCUagaUGGGCAa---GCAGCAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 175998 0.68 0.978564
Target:  5'- cGAGAUCUcCUCGUcCGUCugGUCCCu- -3'
miRNA:   3'- cCUCUAGAuGGGCAaGCAG--CAGGGcu -5'
9001 3' -53.6 NC_002512.2 + 123204 0.68 0.978564
Target:  5'- aGGAGGagCUGCCCGaggaCGUCGccgCCCa- -3'
miRNA:   3'- -CCUCUa-GAUGGGCaa--GCAGCa--GGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.