miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9001 3' -53.6 NC_002512.2 + 183662 1.12 0.006269
Target:  5'- cGGAGAUCUACCCGUUCGUCGUCCCGAa -3'
miRNA:   3'- -CCUCUAGAUGGGCAAGCAGCAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 182789 0.87 0.20777
Target:  5'- cGGAGcGUCUGCgCGUUCGUCaGUCCCGAg -3'
miRNA:   3'- -CCUC-UAGAUGgGCAAGCAG-CAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 220795 0.79 0.543132
Target:  5'- uGGGGAUCguccucgACCCGcUCGUgGUCCCGc -3'
miRNA:   3'- -CCUCUAGa------UGGGCaAGCAgCAGGGCu -5'
9001 3' -53.6 NC_002512.2 + 190664 0.75 0.718922
Target:  5'- --cGAUCUGCCCGUUCacucuccGUUGUCuCCGAu -3'
miRNA:   3'- ccuCUAGAUGGGCAAG-------CAGCAG-GGCU- -5'
9001 3' -53.6 NC_002512.2 + 185319 0.74 0.802483
Target:  5'- cGAGGagCUGCCCGUcugCGUCGccgCCCGGg -3'
miRNA:   3'- cCUCUa-GAUGGGCAa--GCAGCa--GGGCU- -5'
9001 3' -53.6 NC_002512.2 + 54372 0.73 0.819453
Target:  5'- cGGGGUCaGCCCGggUCcaCGUCCCGAu -3'
miRNA:   3'- cCUCUAGaUGGGCa-AGcaGCAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 54178 0.73 0.819453
Target:  5'- cGGGGUCaGCCCGggUCcaCGUCCCGAu -3'
miRNA:   3'- cCUCUAGaUGGGCa-AGcaGCAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 105447 0.73 0.827703
Target:  5'- cGGGGuuccUCcGCaggaCGUUCGUCGUCCCGu -3'
miRNA:   3'- -CCUCu---AGaUGg---GCAAGCAGCAGGGCu -5'
9001 3' -53.6 NC_002512.2 + 76684 0.72 0.879039
Target:  5'- cGGAGAUCcGCUCGUcugaugUCGUCGgcggcgucagcgCCCGGg -3'
miRNA:   3'- -CCUCUAGaUGGGCA------AGCAGCa-----------GGGCU- -5'
9001 3' -53.6 NC_002512.2 + 142246 0.72 0.880412
Target:  5'- cGGGAUCUccgaucugggAUCCGgUCGUCGUCCgGGc -3'
miRNA:   3'- cCUCUAGA----------UGGGCaAGCAGCAGGgCU- -5'
9001 3' -53.6 NC_002512.2 + 89132 0.72 0.880412
Target:  5'- uGGAGGgcgUCUACCCGUggGUCaacGUCuCCGGg -3'
miRNA:   3'- -CCUCU---AGAUGGGCAagCAG---CAG-GGCU- -5'
9001 3' -53.6 NC_002512.2 + 215706 0.72 0.887154
Target:  5'- cGGGGAccgcaucccgcUCUGCCCGcacgUCGagaccuUCGUCCCGc -3'
miRNA:   3'- -CCUCU-----------AGAUGGGCa---AGC------AGCAGGGCu -5'
9001 3' -53.6 NC_002512.2 + 210447 0.71 0.893684
Target:  5'- cGGGGA-CUggACCCGUggaugCGUCCCGAu -3'
miRNA:   3'- -CCUCUaGA--UGGGCAagca-GCAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 184753 0.71 0.911973
Target:  5'- -aGGAUCggcgggcgGCCCGUggUCGUCGacCCCGAg -3'
miRNA:   3'- ccUCUAGa-------UGGGCA--AGCAGCa-GGGCU- -5'
9001 3' -53.6 NC_002512.2 + 125951 0.71 0.917628
Target:  5'- gGGGGAUCgACUCGUU-GUaGUCCCGGu -3'
miRNA:   3'- -CCUCUAGaUGGGCAAgCAgCAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 46185 0.7 0.923059
Target:  5'- cGGAGGUCUcCCCG-UCGagGUCCagguaGAg -3'
miRNA:   3'- -CCUCUAGAuGGGCaAGCagCAGGg----CU- -5'
9001 3' -53.6 NC_002512.2 + 132719 0.69 0.945585
Target:  5'- cGAGAUCcucgGCCCGUgccgCaggcgcagcgcggcGUCGUCCCGc -3'
miRNA:   3'- cCUCUAGa---UGGGCAa---G--------------CAGCAGGGCu -5'
9001 3' -53.6 NC_002512.2 + 121097 0.69 0.946856
Target:  5'- cGGAGAUCcuguacucgggcUAUCCGaUCG-CGUaCCCGAa -3'
miRNA:   3'- -CCUCUAG------------AUGGGCaAGCaGCA-GGGCU- -5'
9001 3' -53.6 NC_002512.2 + 24637 0.69 0.950951
Target:  5'- aGGAGAUCgGCgggaagaCGacgUCGUcCGUCCCGAu -3'
miRNA:   3'- -CCUCUAGaUGg------GCa--AGCA-GCAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 193678 0.69 0.950951
Target:  5'- aGGAGggCU-CCCGca-GUCGgUCCCGGg -3'
miRNA:   3'- -CCUCuaGAuGGGCaagCAGC-AGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.