miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9001 3' -53.6 NC_002512.2 + 105447 0.73 0.827703
Target:  5'- cGGGGuuccUCcGCaggaCGUUCGUCGUCCCGu -3'
miRNA:   3'- -CCUCu---AGaUGg---GCAAGCAGCAGGGCu -5'
9001 3' -53.6 NC_002512.2 + 76759 0.66 0.990348
Target:  5'- -cGGAUC-GCCCGUcccgcccgUCGccaccgaaUCGUCCCGGa -3'
miRNA:   3'- ccUCUAGaUGGGCA--------AGC--------AGCAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 5868 0.66 0.989081
Target:  5'- cGGAGu----CCCGggCGUCGUCCg-- -3'
miRNA:   3'- -CCUCuagauGGGCaaGCAGCAGGgcu -5'
9001 3' -53.6 NC_002512.2 + 40270 0.67 0.984491
Target:  5'- cGAcGAUCgcgugcggccGCCCGcgcacgaaCGUCGUCCCGAg -3'
miRNA:   3'- cCU-CUAGa---------UGGGCaa------GCAGCAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 3703 0.68 0.978564
Target:  5'- cGGAGGUCgACCCGgUCGcUC--CCCGGg -3'
miRNA:   3'- -CCUCUAGaUGGGCaAGC-AGcaGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 123204 0.68 0.978564
Target:  5'- aGGAGGagCUGCCCGaggaCGUCGccgCCCa- -3'
miRNA:   3'- -CCUCUa-GAUGGGCaa--GCAGCa--GGGcu -5'
9001 3' -53.6 NC_002512.2 + 25233 0.68 0.968252
Target:  5'- cGGcGAUCc-CCCGcgcgUCGcCGUCCCGGu -3'
miRNA:   3'- -CCuCUAGauGGGCa---AGCaGCAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 5826 0.68 0.968252
Target:  5'- aGAGGUCgcagacGCCCGacgaGUCGUCCCc- -3'
miRNA:   3'- cCUCUAGa-----UGGGCaag-CAGCAGGGcu -5'
9001 3' -53.6 NC_002512.2 + 131351 0.69 0.958494
Target:  5'- aGGAGAUCccgCUGUgcaUCGUCGUcacCCCGAu -3'
miRNA:   3'- -CCUCUAGaugGGCA---AGCAGCA---GGGCU- -5'
9001 3' -53.6 NC_002512.2 + 3776 0.69 0.958494
Target:  5'- aGGAGAcggACCCGgagUCGgaccggagcaGUCCCGAg -3'
miRNA:   3'- -CCUCUagaUGGGCa--AGCag--------CAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 50575 0.69 0.958494
Target:  5'- -aGGAUCUGCCCGccUCGcCG-CCCGc -3'
miRNA:   3'- ccUCUAGAUGGGCa-AGCaGCaGGGCu -5'
9001 3' -53.6 NC_002512.2 + 155200 0.69 0.954829
Target:  5'- cGAGAUCcgaCCGUUCGUCGaagggaaCCGAa -3'
miRNA:   3'- cCUCUAGaugGGCAAGCAGCag-----GGCU- -5'
9001 3' -53.6 NC_002512.2 + 118660 0.69 0.954829
Target:  5'- cGGGcgCccggccGCCCGUcaUCGUCuGUCCCGAc -3'
miRNA:   3'- cCUCuaGa-----UGGGCA--AGCAG-CAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 134975 0.69 0.953688
Target:  5'- cGGAGcuGUCUGCCCGgcgacCGggacgccuacccguUCGUCCUGGa -3'
miRNA:   3'- -CCUC--UAGAUGGGCaa---GC--------------AGCAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 24637 0.69 0.950951
Target:  5'- aGGAGAUCgGCgggaagaCGacgUCGUcCGUCCCGAu -3'
miRNA:   3'- -CCUCUAGaUGg------GCa--AGCA-GCAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 46185 0.7 0.923059
Target:  5'- cGGAGGUCUcCCCG-UCGagGUCCagguaGAg -3'
miRNA:   3'- -CCUCUAGAuGGGCaAGCagCAGGg----CU- -5'
9001 3' -53.6 NC_002512.2 + 125951 0.71 0.917628
Target:  5'- gGGGGAUCgACUCGUU-GUaGUCCCGGu -3'
miRNA:   3'- -CCUCUAGaUGGGCAAgCAgCAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 142246 0.72 0.880412
Target:  5'- cGGGAUCUccgaucugggAUCCGgUCGUCGUCCgGGc -3'
miRNA:   3'- cCUCUAGA----------UGGGCaAGCAGCAGGgCU- -5'
9001 3' -53.6 NC_002512.2 + 89132 0.72 0.880412
Target:  5'- uGGAGGgcgUCUACCCGUggGUCaacGUCuCCGGg -3'
miRNA:   3'- -CCUCU---AGAUGGGCAagCAG---CAG-GGCU- -5'
9001 3' -53.6 NC_002512.2 + 190664 0.75 0.718922
Target:  5'- --cGAUCUGCCCGUUCacucuccGUUGUCuCCGAu -3'
miRNA:   3'- ccuCUAGAUGGGCAAG-------CAGCAG-GGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.