miRNA display CGI


Results 1 - 20 of 70 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9001 3' -53.6 NC_002512.2 + 3703 0.68 0.978564
Target:  5'- cGGAGGUCgACCCGgUCGcUC--CCCGGg -3'
miRNA:   3'- -CCUCUAGaUGGGCaAGC-AGcaGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 3776 0.69 0.958494
Target:  5'- aGGAGAcggACCCGgagUCGgaccggagcaGUCCCGAg -3'
miRNA:   3'- -CCUCUagaUGGGCa--AGCag--------CAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 5826 0.68 0.968252
Target:  5'- aGAGGUCgcagacGCCCGacgaGUCGUCCCc- -3'
miRNA:   3'- cCUCUAGa-----UGGGCaag-CAGCAGGGcu -5'
9001 3' -53.6 NC_002512.2 + 5868 0.66 0.989081
Target:  5'- cGGAGu----CCCGggCGUCGUCCg-- -3'
miRNA:   3'- -CCUCuagauGGGCaaGCAGCAGGgcu -5'
9001 3' -53.6 NC_002512.2 + 7012 0.66 0.991498
Target:  5'- aGGAGAgccgcagggcCUugCCGggcUCGUCGUUCgGGa -3'
miRNA:   3'- -CCUCUa---------GAugGGCa--AGCAGCAGGgCU- -5'
9001 3' -53.6 NC_002512.2 + 24637 0.69 0.950951
Target:  5'- aGGAGAUCgGCgggaagaCGacgUCGUcCGUCCCGAu -3'
miRNA:   3'- -CCUCUAGaUGg------GCa--AGCA-GCAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 25233 0.68 0.968252
Target:  5'- cGGcGAUCc-CCCGcgcgUCGcCGUCCCGGu -3'
miRNA:   3'- -CCuCUAGauGGGCa---AGCaGCAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 33689 0.66 0.992536
Target:  5'- cGGAGGcUCgccagggACCCGgcCGUCGcCCCc- -3'
miRNA:   3'- -CCUCU-AGa------UGGGCaaGCAGCaGGGcu -5'
9001 3' -53.6 NC_002512.2 + 40270 0.67 0.984491
Target:  5'- cGAcGAUCgcgugcggccGCCCGcgcacgaaCGUCGUCCCGAg -3'
miRNA:   3'- cCU-CUAGa---------UGGGCaa------GCAGCAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 46185 0.7 0.923059
Target:  5'- cGGAGGUCUcCCCG-UCGagGUCCagguaGAg -3'
miRNA:   3'- -CCUCUAGAuGGGCaAGCagCAGGg----CU- -5'
9001 3' -53.6 NC_002512.2 + 50575 0.69 0.958494
Target:  5'- -aGGAUCUGCCCGccUCGcCG-CCCGc -3'
miRNA:   3'- ccUCUAGAUGGGCa-AGCaGCaGGGCu -5'
9001 3' -53.6 NC_002512.2 + 53088 0.66 0.994309
Target:  5'- aGAGAcgCccaggACCCGUUCGcgggcgagcUGUCCCGAg -3'
miRNA:   3'- cCUCUa-Ga----UGGGCAAGCa--------GCAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 54178 0.73 0.819453
Target:  5'- cGGGGUCaGCCCGggUCcaCGUCCCGAu -3'
miRNA:   3'- cCUCUAGaUGGGCa-AGcaGCAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 54372 0.73 0.819453
Target:  5'- cGGGGUCaGCCCGggUCcaCGUCCCGAu -3'
miRNA:   3'- cCUCUAGaUGGGCa-AGcaGCAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 64307 0.66 0.992536
Target:  5'- uGGGGAgcggCUGCCCGgccaccaCGUCgCCGAc -3'
miRNA:   3'- -CCUCUa---GAUGGGCaagca--GCAG-GGCU- -5'
9001 3' -53.6 NC_002512.2 + 76684 0.72 0.879039
Target:  5'- cGGAGAUCcGCUCGUcugaugUCGUCGgcggcgucagcgCCCGGg -3'
miRNA:   3'- -CCUCUAGaUGGGCA------AGCAGCa-----------GGGCU- -5'
9001 3' -53.6 NC_002512.2 + 76759 0.66 0.990348
Target:  5'- -cGGAUC-GCCCGUcccgcccgUCGccaccgaaUCGUCCCGGa -3'
miRNA:   3'- ccUCUAGaUGGGCA--------AGC--------AGCAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 82178 0.66 0.992536
Target:  5'- aGGAGgGUCgagaGCCCGUccgcCGUCGggccggcguccUCCCGGg -3'
miRNA:   3'- -CCUC-UAGa---UGGGCAa---GCAGC-----------AGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 88147 0.69 0.958494
Target:  5'- gGGAcGAUCcGCCCGUggcCGUCGUgCgGGa -3'
miRNA:   3'- -CCU-CUAGaUGGGCAa--GCAGCAgGgCU- -5'
9001 3' -53.6 NC_002512.2 + 89132 0.72 0.880412
Target:  5'- uGGAGGgcgUCUACCCGUggGUCaacGUCuCCGGg -3'
miRNA:   3'- -CCUCU---AGAUGGGCAagCAG---CAG-GGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.