miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9001 3' -53.6 NC_002512.2 + 93106 0.66 0.992536
Target:  5'- uGGGcuUCUGCCUGUUCuUCGUgCUGGa -3'
miRNA:   3'- -CCUcuAGAUGGGCAAGcAGCAgGGCU- -5'
9001 3' -53.6 NC_002512.2 + 100992 0.66 0.994309
Target:  5'- gGGcGGAUCgccagGCCCG-UC-UCGUCCCu- -3'
miRNA:   3'- -CC-UCUAGa----UGGGCaAGcAGCAGGGcu -5'
9001 3' -53.6 NC_002512.2 + 103406 0.67 0.982673
Target:  5'- cGGGGccacgaacucGUCgaagACgCCGUcgaacgCGUCGUCCCGGu -3'
miRNA:   3'- -CCUC----------UAGa---UG-GGCAa-----GCAGCAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 105447 0.73 0.827703
Target:  5'- cGGGGuuccUCcGCaggaCGUUCGUCGUCCCGu -3'
miRNA:   3'- -CCUCu---AGaUGg---GCAAGCAGCAGGGCu -5'
9001 3' -53.6 NC_002512.2 + 105933 0.66 0.991498
Target:  5'- cGGGGAggcggACUCGUUCGUCacgGUCgCGGa -3'
miRNA:   3'- -CCUCUaga--UGGGCAAGCAG---CAGgGCU- -5'
9001 3' -53.6 NC_002512.2 + 106330 0.66 0.991498
Target:  5'- cGGcGGcUCUcCCCGgUCGcUCGUCCCGc -3'
miRNA:   3'- -CC-UCuAGAuGGGCaAGC-AGCAGGGCu -5'
9001 3' -53.6 NC_002512.2 + 108884 0.67 0.981509
Target:  5'- cGGGGAUCgucgaacgACCCGUaCGcccucucgagcgucuUCGUCCUGu -3'
miRNA:   3'- -CCUCUAGa-------UGGGCAaGC---------------AGCAGGGCu -5'
9001 3' -53.6 NC_002512.2 + 108936 0.68 0.976257
Target:  5'- --uGAUCUGCCUGgcggUGUCGUUCCu- -3'
miRNA:   3'- ccuCUAGAUGGGCaa--GCAGCAGGGcu -5'
9001 3' -53.6 NC_002512.2 + 112238 0.66 0.989081
Target:  5'- cGGGAUCUGgUagcaGUUCcUCGUCUCGAg -3'
miRNA:   3'- cCUCUAGAUgGg---CAAGcAGCAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 118660 0.69 0.954829
Target:  5'- cGGGcgCccggccGCCCGUcaUCGUCuGUCCCGAc -3'
miRNA:   3'- cCUCuaGa-----UGGGCA--AGCAG-CAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 121097 0.69 0.946856
Target:  5'- cGGAGAUCcuguacucgggcUAUCCGaUCG-CGUaCCCGAa -3'
miRNA:   3'- -CCUCUAG------------AUGGGCaAGCaGCA-GGGCU- -5'
9001 3' -53.6 NC_002512.2 + 123204 0.68 0.978564
Target:  5'- aGGAGGagCUGCCCGaggaCGUCGccgCCCa- -3'
miRNA:   3'- -CCUCUa-GAUGGGCaa--GCAGCa--GGGcu -5'
9001 3' -53.6 NC_002512.2 + 125951 0.71 0.917628
Target:  5'- gGGGGAUCgACUCGUU-GUaGUCCCGGu -3'
miRNA:   3'- -CCUCUAGaUGGGCAAgCAgCAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 126809 0.67 0.986159
Target:  5'- cGGGAUCgccuCCCGUa-GUCcGUCCCGu -3'
miRNA:   3'- cCUCUAGau--GGGCAagCAG-CAGGGCu -5'
9001 3' -53.6 NC_002512.2 + 131351 0.69 0.958494
Target:  5'- aGGAGAUCccgCUGUgcaUCGUCGUcacCCCGAu -3'
miRNA:   3'- -CCUCUAGaugGGCA---AGCAGCA---GGGCU- -5'
9001 3' -53.6 NC_002512.2 + 132719 0.69 0.945585
Target:  5'- cGAGAUCcucgGCCCGUgccgCaggcgcagcgcggcGUCGUCCCGc -3'
miRNA:   3'- cCUCUAGa---UGGGCAa---G--------------CAGCAGGGCu -5'
9001 3' -53.6 NC_002512.2 + 133795 0.67 0.986159
Target:  5'- cGAGAUCUuCgCGUcCGUCGaCCUGAc -3'
miRNA:   3'- cCUCUAGAuGgGCAaGCAGCaGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 134975 0.69 0.953688
Target:  5'- cGGAGcuGUCUGCCCGgcgacCGggacgccuacccguUCGUCCUGGa -3'
miRNA:   3'- -CCUC--UAGAUGGGCaa---GC--------------AGCAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 135117 0.66 0.992536
Target:  5'- uGGAGAaCUACCUcuccaagGUCGUCaCCGAc -3'
miRNA:   3'- -CCUCUaGAUGGGcaag---CAGCAG-GGCU- -5'
9001 3' -53.6 NC_002512.2 + 142246 0.72 0.880412
Target:  5'- cGGGAUCUccgaucugggAUCCGgUCGUCGUCCgGGc -3'
miRNA:   3'- cCUCUAGA----------UGGGCaAGCAGCAGGgCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.