miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9001 3' -53.6 NC_002512.2 + 125951 0.71 0.917628
Target:  5'- gGGGGAUCgACUCGUU-GUaGUCCCGGu -3'
miRNA:   3'- -CCUCUAGaUGGGCAAgCAgCAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 46185 0.7 0.923059
Target:  5'- cGGAGGUCUcCCCG-UCGagGUCCagguaGAg -3'
miRNA:   3'- -CCUCUAGAuGGGCaAGCagCAGGg----CU- -5'
9001 3' -53.6 NC_002512.2 + 24637 0.69 0.950951
Target:  5'- aGGAGAUCgGCgggaagaCGacgUCGUcCGUCCCGAu -3'
miRNA:   3'- -CCUCUAGaUGg------GCa--AGCA-GCAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 134975 0.69 0.953688
Target:  5'- cGGAGcuGUCUGCCCGgcgacCGggacgccuacccguUCGUCCUGGa -3'
miRNA:   3'- -CCUC--UAGAUGGGCaa---GC--------------AGCAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 5826 0.68 0.968252
Target:  5'- aGAGGUCgcagacGCCCGacgaGUCGUCCCc- -3'
miRNA:   3'- cCUCUAGa-----UGGGCaag-CAGCAGGGcu -5'
9001 3' -53.6 NC_002512.2 + 131351 0.69 0.958494
Target:  5'- aGGAGAUCccgCUGUgcaUCGUCGUcacCCCGAu -3'
miRNA:   3'- -CCUCUAGaugGGCA---AGCAGCA---GGGCU- -5'
9001 3' -53.6 NC_002512.2 + 3776 0.69 0.958494
Target:  5'- aGGAGAcggACCCGgagUCGgaccggagcaGUCCCGAg -3'
miRNA:   3'- -CCUCUagaUGGGCa--AGCag--------CAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 50575 0.69 0.958494
Target:  5'- -aGGAUCUGCCCGccUCGcCG-CCCGc -3'
miRNA:   3'- ccUCUAGAUGGGCa-AGCaGCaGGGCu -5'
9001 3' -53.6 NC_002512.2 + 155200 0.69 0.954829
Target:  5'- cGAGAUCcgaCCGUUCGUCGaagggaaCCGAa -3'
miRNA:   3'- cCUCUAGaugGGCAAGCAGCag-----GGCU- -5'
9001 3' -53.6 NC_002512.2 + 118660 0.69 0.954829
Target:  5'- cGGGcgCccggccGCCCGUcaUCGUCuGUCCCGAc -3'
miRNA:   3'- cCUCuaGa-----UGGGCA--AGCAG-CAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 112238 0.66 0.989081
Target:  5'- cGGGAUCUGgUagcaGUUCcUCGUCUCGAg -3'
miRNA:   3'- cCUCUAGAUgGg---CAAGcAGCAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 219656 0.66 0.989856
Target:  5'- cGGAGGUUcGCCCGUcgggaucugggcgCGcCG-CCCGAg -3'
miRNA:   3'- -CCUCUAGaUGGGCAa------------GCaGCaGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 223205 0.66 0.990348
Target:  5'- cGGGGA-CggcguCCCGgagCG-CGUCCCGGc -3'
miRNA:   3'- -CCUCUaGau---GGGCaa-GCaGCAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 217784 0.66 0.990348
Target:  5'- cGGGGUCgcgGCCggcuggcggauCGgcgUCGcCGUCCCGAu -3'
miRNA:   3'- cCUCUAGa--UGG-----------GCa--AGCaGCAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 204794 0.66 0.991498
Target:  5'- aGGAGAc--GCCCGggaGguccgCGUCCCGGg -3'
miRNA:   3'- -CCUCUagaUGGGCaagCa----GCAGGGCU- -5'
9001 3' -53.6 NC_002512.2 + 219277 0.66 0.992134
Target:  5'- aGGGGGcggacgccgacgcCgugGCCCGcUUCGUCGUCCgCGGc -3'
miRNA:   3'- -CCUCUa------------Ga--UGGGC-AAGCAGCAGG-GCU- -5'
9001 3' -53.6 NC_002512.2 + 93106 0.66 0.992536
Target:  5'- uGGGcuUCUGCCUGUUCuUCGUgCUGGa -3'
miRNA:   3'- -CCUcuAGAUGGGCAAGcAGCAgGGCU- -5'
9001 3' -53.6 NC_002512.2 + 213676 0.66 0.992536
Target:  5'- cGGAGGggaGCCCGg-CGUCG-CCCGc -3'
miRNA:   3'- -CCUCUagaUGGGCaaGCAGCaGGGCu -5'
9001 3' -53.6 NC_002512.2 + 216855 0.66 0.992536
Target:  5'- cGuGAUCUcGCCC--UCGUCGUCCgCGu -3'
miRNA:   3'- cCuCUAGA-UGGGcaAGCAGCAGG-GCu -5'
9001 3' -53.6 NC_002512.2 + 183662 1.12 0.006269
Target:  5'- cGGAGAUCUACCCGUUCGUCGUCCCGAa -3'
miRNA:   3'- -CCUCUAGAUGGGCAAGCAGCAGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.