Results 21 - 40 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9001 | 5' | -59.8 | NC_002512.2 | + | 95689 | 0.71 | 0.53354 |
Target: 5'- cGCC-GGGCCUcCGGCGGGGAcggggGGCCg- -3' miRNA: 3'- aUGGaCCUGGA-GCUGCCCCU-----CUGGag -5' |
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9001 | 5' | -59.8 | NC_002512.2 | + | 95915 | 0.7 | 0.590958 |
Target: 5'- gACgaGGACCUCGAUGGGGgugaagGGACggUUCa -3' miRNA: 3'- aUGgaCCUGGAGCUGCCCC------UCUG--GAG- -5' |
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9001 | 5' | -59.8 | NC_002512.2 | + | 98325 | 0.7 | 0.633749 |
Target: 5'- gGCUcgGGGCCgggGACGGGGAGgggggcggccccuccGCCUCg -3' miRNA: 3'- aUGGa-CCUGGag-CUGCCCCUC---------------UGGAG- -5' |
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9001 | 5' | -59.8 | NC_002512.2 | + | 100486 | 0.69 | 0.659059 |
Target: 5'- gGCCcGGACCU---UGGGGAGGCCg- -3' miRNA: 3'- aUGGaCCUGGAgcuGCCCCUCUGGag -5' |
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9001 | 5' | -59.8 | NC_002512.2 | + | 104843 | 0.7 | 0.590958 |
Target: 5'- cGgCUGGAg--CGGCGGGGAggGACCUCg -3' miRNA: 3'- aUgGACCUggaGCUGCCCCU--CUGGAG- -5' |
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9001 | 5' | -59.8 | NC_002512.2 | + | 106536 | 0.66 | 0.838433 |
Target: 5'- gGCCccGGACCUUgGACGGGGGcuccagcGGCC-Cg -3' miRNA: 3'- aUGGa-CCUGGAG-CUGCCCCU-------CUGGaG- -5' |
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9001 | 5' | -59.8 | NC_002512.2 | + | 107209 | 0.66 | 0.831344 |
Target: 5'- aGCC-GGGCCgCGGcCGGGGAG-CCg- -3' miRNA: 3'- aUGGaCCUGGaGCU-GCCCCUCuGGag -5' |
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9001 | 5' | -59.8 | NC_002512.2 | + | 108530 | 0.69 | 0.68809 |
Target: 5'- gGCCggGGACC-CGACGGcGGAGaagguccgccggGCCUUc -3' miRNA: 3'- aUGGa-CCUGGaGCUGCC-CCUC------------UGGAG- -5' |
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9001 | 5' | -59.8 | NC_002512.2 | + | 109841 | 0.71 | 0.53354 |
Target: 5'- cGCCgggcgucggGGACCggcguggCGGCGGuGGGGACCUa -3' miRNA: 3'- aUGGa--------CCUGGa------GCUGCC-CCUCUGGAg -5' |
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9001 | 5' | -59.8 | NC_002512.2 | + | 113215 | 0.69 | 0.668765 |
Target: 5'- aGCCgGGuCCUCGccCGGGGAGACg-- -3' miRNA: 3'- aUGGaCCuGGAGCu-GCCCCUCUGgag -5' |
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9001 | 5' | -59.8 | NC_002512.2 | + | 115876 | 0.66 | 0.84691 |
Target: 5'- gUGCCgcugcgGGGCCgaCGGCGGcGGGACCa- -3' miRNA: 3'- -AUGGa-----CCUGGa-GCUGCCcCUCUGGag -5' |
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9001 | 5' | -59.8 | NC_002512.2 | + | 120787 | 0.66 | 0.853686 |
Target: 5'- aGCCUGGcGCUgacggccacggugUCGACGGaccuggcgcgcGGGGACCUg -3' miRNA: 3'- aUGGACC-UGG-------------AGCUGCC-----------CCUCUGGAg -5' |
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9001 | 5' | -59.8 | NC_002512.2 | + | 121775 | 0.66 | 0.815122 |
Target: 5'- gACCgcGGACCgccgaGGCGGGGAcGCCg- -3' miRNA: 3'- aUGGa-CCUGGag---CUGCCCCUcUGGag -5' |
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9001 | 5' | -59.8 | NC_002512.2 | + | 123733 | 0.67 | 0.780929 |
Target: 5'- gUGCUcGGACCU--GCGGGGucGGACCUg -3' miRNA: 3'- -AUGGaCCUGGAgcUGCCCC--UCUGGAg -5' |
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9001 | 5' | -59.8 | NC_002512.2 | + | 123907 | 0.67 | 0.780929 |
Target: 5'- cACCU--ACCUCGACGGccaGGaAGACCUg -3' miRNA: 3'- aUGGAccUGGAGCUGCC---CC-UCUGGAg -5' |
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9001 | 5' | -59.8 | NC_002512.2 | + | 128201 | 0.69 | 0.649333 |
Target: 5'- cGCCggcgGGACCgggGACGGGGAcGACUg- -3' miRNA: 3'- aUGGa---CCUGGag-CUGCCCCU-CUGGag -5' |
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9001 | 5' | -59.8 | NC_002512.2 | + | 128380 | 0.68 | 0.735528 |
Target: 5'- -cCCUGuGCUaCGACGGGGAGAgcgaCUCg -3' miRNA: 3'- auGGACcUGGaGCUGCCCCUCUg---GAG- -5' |
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9001 | 5' | -59.8 | NC_002512.2 | + | 129541 | 0.66 | 0.815122 |
Target: 5'- cGCCgucucccuauUGGGCgUCGACGaggcccGGGAGGCCg- -3' miRNA: 3'- aUGG----------ACCUGgAGCUGC------CCCUCUGGag -5' |
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9001 | 5' | -59.8 | NC_002512.2 | + | 130213 | 0.76 | 0.297946 |
Target: 5'- gGCCagUGGuCCUCGGCGGcGGGGaACCUCu -3' miRNA: 3'- aUGG--ACCuGGAGCUGCC-CCUC-UGGAG- -5' |
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9001 | 5' | -59.8 | NC_002512.2 | + | 131994 | 0.79 | 0.216624 |
Target: 5'- cGCgUGGGCCgccccgggCGcCGGGGGGACCUCg -3' miRNA: 3'- aUGgACCUGGa-------GCuGCCCCUCUGGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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