miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9001 5' -59.8 NC_002512.2 + 95689 0.71 0.53354
Target:  5'- cGCC-GGGCCUcCGGCGGGGAcggggGGCCg- -3'
miRNA:   3'- aUGGaCCUGGA-GCUGCCCCU-----CUGGag -5'
9001 5' -59.8 NC_002512.2 + 95915 0.7 0.590958
Target:  5'- gACgaGGACCUCGAUGGGGgugaagGGACggUUCa -3'
miRNA:   3'- aUGgaCCUGGAGCUGCCCC------UCUG--GAG- -5'
9001 5' -59.8 NC_002512.2 + 98325 0.7 0.633749
Target:  5'- gGCUcgGGGCCgggGACGGGGAGgggggcggccccuccGCCUCg -3'
miRNA:   3'- aUGGa-CCUGGag-CUGCCCCUC---------------UGGAG- -5'
9001 5' -59.8 NC_002512.2 + 100486 0.69 0.659059
Target:  5'- gGCCcGGACCU---UGGGGAGGCCg- -3'
miRNA:   3'- aUGGaCCUGGAgcuGCCCCUCUGGag -5'
9001 5' -59.8 NC_002512.2 + 104843 0.7 0.590958
Target:  5'- cGgCUGGAg--CGGCGGGGAggGACCUCg -3'
miRNA:   3'- aUgGACCUggaGCUGCCCCU--CUGGAG- -5'
9001 5' -59.8 NC_002512.2 + 106536 0.66 0.838433
Target:  5'- gGCCccGGACCUUgGACGGGGGcuccagcGGCC-Cg -3'
miRNA:   3'- aUGGa-CCUGGAG-CUGCCCCU-------CUGGaG- -5'
9001 5' -59.8 NC_002512.2 + 107209 0.66 0.831344
Target:  5'- aGCC-GGGCCgCGGcCGGGGAG-CCg- -3'
miRNA:   3'- aUGGaCCUGGaGCU-GCCCCUCuGGag -5'
9001 5' -59.8 NC_002512.2 + 108530 0.69 0.68809
Target:  5'- gGCCggGGACC-CGACGGcGGAGaagguccgccggGCCUUc -3'
miRNA:   3'- aUGGa-CCUGGaGCUGCC-CCUC------------UGGAG- -5'
9001 5' -59.8 NC_002512.2 + 109841 0.71 0.53354
Target:  5'- cGCCgggcgucggGGACCggcguggCGGCGGuGGGGACCUa -3'
miRNA:   3'- aUGGa--------CCUGGa------GCUGCC-CCUCUGGAg -5'
9001 5' -59.8 NC_002512.2 + 113215 0.69 0.668765
Target:  5'- aGCCgGGuCCUCGccCGGGGAGACg-- -3'
miRNA:   3'- aUGGaCCuGGAGCu-GCCCCUCUGgag -5'
9001 5' -59.8 NC_002512.2 + 115876 0.66 0.84691
Target:  5'- gUGCCgcugcgGGGCCgaCGGCGGcGGGACCa- -3'
miRNA:   3'- -AUGGa-----CCUGGa-GCUGCCcCUCUGGag -5'
9001 5' -59.8 NC_002512.2 + 120787 0.66 0.853686
Target:  5'- aGCCUGGcGCUgacggccacggugUCGACGGaccuggcgcgcGGGGACCUg -3'
miRNA:   3'- aUGGACC-UGG-------------AGCUGCC-----------CCUCUGGAg -5'
9001 5' -59.8 NC_002512.2 + 121775 0.66 0.815122
Target:  5'- gACCgcGGACCgccgaGGCGGGGAcGCCg- -3'
miRNA:   3'- aUGGa-CCUGGag---CUGCCCCUcUGGag -5'
9001 5' -59.8 NC_002512.2 + 123733 0.67 0.780929
Target:  5'- gUGCUcGGACCU--GCGGGGucGGACCUg -3'
miRNA:   3'- -AUGGaCCUGGAgcUGCCCC--UCUGGAg -5'
9001 5' -59.8 NC_002512.2 + 123907 0.67 0.780929
Target:  5'- cACCU--ACCUCGACGGccaGGaAGACCUg -3'
miRNA:   3'- aUGGAccUGGAGCUGCC---CC-UCUGGAg -5'
9001 5' -59.8 NC_002512.2 + 128201 0.69 0.649333
Target:  5'- cGCCggcgGGACCgggGACGGGGAcGACUg- -3'
miRNA:   3'- aUGGa---CCUGGag-CUGCCCCU-CUGGag -5'
9001 5' -59.8 NC_002512.2 + 128380 0.68 0.735528
Target:  5'- -cCCUGuGCUaCGACGGGGAGAgcgaCUCg -3'
miRNA:   3'- auGGACcUGGaGCUGCCCCUCUg---GAG- -5'
9001 5' -59.8 NC_002512.2 + 129541 0.66 0.815122
Target:  5'- cGCCgucucccuauUGGGCgUCGACGaggcccGGGAGGCCg- -3'
miRNA:   3'- aUGG----------ACCUGgAGCUGC------CCCUCUGGag -5'
9001 5' -59.8 NC_002512.2 + 130213 0.76 0.297946
Target:  5'- gGCCagUGGuCCUCGGCGGcGGGGaACCUCu -3'
miRNA:   3'- aUGG--ACCuGGAGCUGCC-CCUC-UGGAG- -5'
9001 5' -59.8 NC_002512.2 + 131994 0.79 0.216624
Target:  5'- cGCgUGGGCCgccccgggCGcCGGGGGGACCUCg -3'
miRNA:   3'- aUGgACCUGGa-------GCuGCCCCUCUGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.