miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9001 5' -59.8 NC_002512.2 + 9688 0.69 0.668765
Target:  5'- cGCCgucGGGCCcCGGCGGGGguucgcGGaACCUCc -3'
miRNA:   3'- aUGGa--CCUGGaGCUGCCCC------UC-UGGAG- -5'
9001 5' -59.8 NC_002512.2 + 13435 0.66 0.854431
Target:  5'- cUACCUGGGCuuCUCGAUGGaGAGGgCg- -3'
miRNA:   3'- -AUGGACCUG--GAGCUGCCcCUCUgGag -5'
9001 5' -59.8 NC_002512.2 + 31773 0.67 0.768479
Target:  5'- aACCUcaaggGGGCCaaacccuacucggCGACGGGGAGACg-- -3'
miRNA:   3'- aUGGA-----CCUGGa------------GCUGCCCCUCUGgag -5'
9001 5' -59.8 NC_002512.2 + 36566 0.73 0.425894
Target:  5'- --gCUGGAgCCgggaggCGGCGGuGGAGACCUCc -3'
miRNA:   3'- augGACCU-GGa-----GCUGCC-CCUCUGGAG- -5'
9001 5' -59.8 NC_002512.2 + 43653 0.67 0.806782
Target:  5'- gACCgGGACCUCGcccuCGGuGGcGGCCg- -3'
miRNA:   3'- aUGGaCCUGGAGCu---GCC-CCuCUGGag -5'
9001 5' -59.8 NC_002512.2 + 53147 0.66 0.831344
Target:  5'- gACCcugaaGGACCU-GACGGcGGAGAUCa- -3'
miRNA:   3'- aUGGa----CCUGGAgCUGCC-CCUCUGGag -5'
9001 5' -59.8 NC_002512.2 + 53614 0.72 0.478231
Target:  5'- -cCCUGGACCcgaagcggaucgUCGGCGGGGAGAag-Cg -3'
miRNA:   3'- auGGACCUGG------------AGCUGCCCCUCUggaG- -5'
9001 5' -59.8 NC_002512.2 + 55033 0.67 0.789678
Target:  5'- aGCCggucGGGCCgccuacCGACGGGaGAGACgaUCg -3'
miRNA:   3'- aUGGa---CCUGGa-----GCUGCCC-CUCUGg-AG- -5'
9001 5' -59.8 NC_002512.2 + 63018 0.66 0.854431
Target:  5'- gUACCaGGAgCUCGGCGagcaGGGAGcGCCg- -3'
miRNA:   3'- -AUGGaCCUgGAGCUGC----CCCUC-UGGag -5'
9001 5' -59.8 NC_002512.2 + 72533 0.67 0.763076
Target:  5'- gGCCcGGACCUCGGCGGccAGGCg-- -3'
miRNA:   3'- aUGGaCCUGGAGCUGCCccUCUGgag -5'
9001 5' -59.8 NC_002512.2 + 74295 0.66 0.854431
Target:  5'- -cCCgUGGuCCUCGACGGaGGAcagGACgUCc -3'
miRNA:   3'- auGG-ACCuGGAGCUGCC-CCU---CUGgAG- -5'
9001 5' -59.8 NC_002512.2 + 74581 0.66 0.84691
Target:  5'- cGCuCUGGugCUCGAggcCGGGGc--CCUCc -3'
miRNA:   3'- aUG-GACCugGAGCU---GCCCCucuGGAG- -5'
9001 5' -59.8 NC_002512.2 + 75480 0.66 0.831344
Target:  5'- uUGCCUcGGACCccgaucgccucCGACGGGGgcgGGACUUUc -3'
miRNA:   3'- -AUGGA-CCUGGa----------GCUGCCCC---UCUGGAG- -5'
9001 5' -59.8 NC_002512.2 + 80820 0.67 0.763076
Target:  5'- cGCCUcGGCgUCGGCGGaGGGGccccguaggcgaGCCUCg -3'
miRNA:   3'- aUGGAcCUGgAGCUGCC-CCUC------------UGGAG- -5'
9001 5' -59.8 NC_002512.2 + 83008 0.67 0.806782
Target:  5'- cGCCUGGGCCUCcgGGCGGuaGuGGCCcCg -3'
miRNA:   3'- aUGGACCUGGAG--CUGCCc-CuCUGGaG- -5'
9001 5' -59.8 NC_002512.2 + 86516 0.67 0.789678
Target:  5'- aGCCgu--CCUUGAgCGGGGAGGCCcCa -3'
miRNA:   3'- aUGGaccuGGAGCU-GCCCCUCUGGaG- -5'
9001 5' -59.8 NC_002512.2 + 87404 0.72 0.524149
Target:  5'- gUGCUgGGGCCugacaUCGugGGGGAGAUCgUCa -3'
miRNA:   3'- -AUGGaCCUGG-----AGCugCCCCUCUGG-AG- -5'
9001 5' -59.8 NC_002512.2 + 89426 0.71 0.57165
Target:  5'- gGCCUcGGGCgUCGGCGGGGucacguccGGGCC-Ca -3'
miRNA:   3'- aUGGA-CCUGgAGCUGCCCC--------UCUGGaG- -5'
9001 5' -59.8 NC_002512.2 + 90044 0.72 0.505561
Target:  5'- gGCCUGG-CCUCGcuCGGGGucGACCa- -3'
miRNA:   3'- aUGGACCuGGAGCu-GCCCCu-CUGGag -5'
9001 5' -59.8 NC_002512.2 + 90484 0.69 0.668765
Target:  5'- cACCgGGGcguCCUCGACGGGaucGGGGCCg- -3'
miRNA:   3'- aUGGaCCU---GGAGCUGCCC---CUCUGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.