miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9001 5' -59.8 NC_002512.2 + 121775 0.66 0.815122
Target:  5'- gACCgcGGACCgccgaGGCGGGGAcGCCg- -3'
miRNA:   3'- aUGGa-CCUGGag---CUGCCCCUcUGGag -5'
9001 5' -59.8 NC_002512.2 + 72533 0.67 0.763076
Target:  5'- gGCCcGGACCUCGGCGGccAGGCg-- -3'
miRNA:   3'- aUGGaCCUGGAGCUGCCccUCUGgag -5'
9001 5' -59.8 NC_002512.2 + 80820 0.67 0.763076
Target:  5'- cGCCUcGGCgUCGGCGGaGGGGccccguaggcgaGCCUCg -3'
miRNA:   3'- aUGGAcCUGgAGCUGCC-CCUC------------UGGAG- -5'
9001 5' -59.8 NC_002512.2 + 31773 0.67 0.768479
Target:  5'- aACCUcaaggGGGCCaaacccuacucggCGACGGGGAGACg-- -3'
miRNA:   3'- aUGGA-----CCUGGa------------GCUGCCCCUCUGgag -5'
9001 5' -59.8 NC_002512.2 + 123733 0.67 0.780929
Target:  5'- gUGCUcGGACCU--GCGGGGucGGACCUg -3'
miRNA:   3'- -AUGGaCCUGGAgcUGCCCC--UCUGGAg -5'
9001 5' -59.8 NC_002512.2 + 86516 0.67 0.789678
Target:  5'- aGCCgu--CCUUGAgCGGGGAGGCCcCa -3'
miRNA:   3'- aUGGaccuGGAGCU-GCCCCUCUGGaG- -5'
9001 5' -59.8 NC_002512.2 + 55033 0.67 0.789678
Target:  5'- aGCCggucGGGCCgccuacCGACGGGaGAGACgaUCg -3'
miRNA:   3'- aUGGa---CCUGGa-----GCUGCCC-CUCUGg-AG- -5'
9001 5' -59.8 NC_002512.2 + 43653 0.67 0.806782
Target:  5'- gACCgGGACCUCGcccuCGGuGGcGGCCg- -3'
miRNA:   3'- aUGGaCCUGGAGCu---GCC-CCuCUGGag -5'
9001 5' -59.8 NC_002512.2 + 83008 0.67 0.806782
Target:  5'- cGCCUGGGCCUCcgGGCGGuaGuGGCCcCg -3'
miRNA:   3'- aUGGACCUGGAG--CUGCCc-CuCUGGaG- -5'
9001 5' -59.8 NC_002512.2 + 135148 0.68 0.744803
Target:  5'- cGCCUGcGACCg-GGCGGGGuucGCCUg -3'
miRNA:   3'- aUGGAC-CUGGagCUGCCCCuc-UGGAg -5'
9001 5' -59.8 NC_002512.2 + 133585 0.68 0.735528
Target:  5'- cGCCggGGACC-CGAgCGGGccGGCCUCc -3'
miRNA:   3'- aUGGa-CCUGGaGCU-GCCCcuCUGGAG- -5'
9001 5' -59.8 NC_002512.2 + 128380 0.68 0.735528
Target:  5'- -cCCUGuGCUaCGACGGGGAGAgcgaCUCg -3'
miRNA:   3'- auGGACcUGGaGCUGCCCCUCUg---GAG- -5'
9001 5' -59.8 NC_002512.2 + 53614 0.72 0.478231
Target:  5'- -cCCUGGACCcgaagcggaucgUCGGCGGGGAGAag-Cg -3'
miRNA:   3'- auGGACCUGG------------AGCUGCCCCUCUggaG- -5'
9001 5' -59.8 NC_002512.2 + 90044 0.72 0.505561
Target:  5'- gGCCUGG-CCUCGcuCGGGGucGACCa- -3'
miRNA:   3'- aUGGACCuGGAGCu-GCCCCu-CUGGag -5'
9001 5' -59.8 NC_002512.2 + 87404 0.72 0.524149
Target:  5'- gUGCUgGGGCCugacaUCGugGGGGAGAUCgUCa -3'
miRNA:   3'- -AUGGaCCUGG-----AGCugCCCCUCUGG-AG- -5'
9001 5' -59.8 NC_002512.2 + 104843 0.7 0.590958
Target:  5'- cGgCUGGAg--CGGCGGGGAggGACCUCg -3'
miRNA:   3'- aUgGACCUggaGCUGCCCCU--CUGGAG- -5'
9001 5' -59.8 NC_002512.2 + 98325 0.7 0.633749
Target:  5'- gGCUcgGGGCCgggGACGGGGAGgggggcggccccuccGCCUCg -3'
miRNA:   3'- aUGGa-CCUGGag-CUGCCCCUC---------------UGGAG- -5'
9001 5' -59.8 NC_002512.2 + 128201 0.69 0.649333
Target:  5'- cGCCggcgGGACCgggGACGGGGAcGACUg- -3'
miRNA:   3'- aUGGa---CCUGGag-CUGCCCCU-CUGGag -5'
9001 5' -59.8 NC_002512.2 + 9688 0.69 0.668765
Target:  5'- cGCCgucGGGCCcCGGCGGGGguucgcGGaACCUCc -3'
miRNA:   3'- aUGGa--CCUGGaGCUGCCCC------UC-UGGAG- -5'
9001 5' -59.8 NC_002512.2 + 141542 0.68 0.716741
Target:  5'- cACCauggUGGACU---ACGGGGuGACCUCg -3'
miRNA:   3'- aUGG----ACCUGGagcUGCCCCuCUGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.