miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9001 5' -59.8 NC_002512.2 + 183696 1.06 0.003083
Target:  5'- cUACCUGGACCUCGACGGGGAGACCUCc -3'
miRNA:   3'- -AUGGACCUGGAGCUGCCCCUCUGGAG- -5'
9001 5' -59.8 NC_002512.2 + 184794 0.81 0.151338
Target:  5'- gGCCcGGGCCUCcGCGGGGAGACCc- -3'
miRNA:   3'- aUGGaCCUGGAGcUGCCCCUCUGGag -5'
9001 5' -59.8 NC_002512.2 + 131994 0.79 0.216624
Target:  5'- cGCgUGGGCCgccccgggCGcCGGGGGGACCUCg -3'
miRNA:   3'- aUGgACCUGGa-------GCuGCCCCUCUGGAG- -5'
9001 5' -59.8 NC_002512.2 + 130213 0.76 0.297946
Target:  5'- gGCCagUGGuCCUCGGCGGcGGGGaACCUCu -3'
miRNA:   3'- aUGG--ACCuGGAGCUGCC-CCUC-UGGAG- -5'
9001 5' -59.8 NC_002512.2 + 225219 0.75 0.332248
Target:  5'- -uCCUGGGCUUCGACGcgccGGcGGGGCCUCc -3'
miRNA:   3'- auGGACCUGGAGCUGC----CC-CUCUGGAG- -5'
9001 5' -59.8 NC_002512.2 + 225821 0.74 0.417505
Target:  5'- gGCCUgGGACCUCGAgcCGcGGGGGAUCg- -3'
miRNA:   3'- aUGGA-CCUGGAGCU--GC-CCCUCUGGag -5'
9001 5' -59.8 NC_002512.2 + 36566 0.73 0.425894
Target:  5'- --gCUGGAgCCgggaggCGGCGGuGGAGACCUCc -3'
miRNA:   3'- augGACCU-GGa-----GCUGCC-CCUCUGGAG- -5'
9001 5' -59.8 NC_002512.2 + 53614 0.72 0.478231
Target:  5'- -cCCUGGACCcgaagcggaucgUCGGCGGGGAGAag-Cg -3'
miRNA:   3'- auGGACCUGG------------AGCUGCCCCUCUggaG- -5'
9001 5' -59.8 NC_002512.2 + 159951 0.72 0.496374
Target:  5'- gGCC-GGACCggaGACcuaccGGGAGACCUCg -3'
miRNA:   3'- aUGGaCCUGGag-CUGc----CCCUCUGGAG- -5'
9001 5' -59.8 NC_002512.2 + 90044 0.72 0.505561
Target:  5'- gGCCUGG-CCUCGcuCGGGGucGACCa- -3'
miRNA:   3'- aUGGACCuGGAGCu-GCCCCu-CUGGag -5'
9001 5' -59.8 NC_002512.2 + 185065 0.72 0.513892
Target:  5'- gACCcGGGCCUCGACcGGGAGcucggccGCUUCu -3'
miRNA:   3'- aUGGaCCUGGAGCUGcCCCUC-------UGGAG- -5'
9001 5' -59.8 NC_002512.2 + 87404 0.72 0.524149
Target:  5'- gUGCUgGGGCCugacaUCGugGGGGAGAUCgUCa -3'
miRNA:   3'- -AUGGaCCUGG-----AGCugCCCCUCUGG-AG- -5'
9001 5' -59.8 NC_002512.2 + 109841 0.71 0.53354
Target:  5'- cGCCgggcgucggGGACCggcguggCGGCGGuGGGGACCUa -3'
miRNA:   3'- aUGGa--------CCUGGa------GCUGCC-CCUCUGGAg -5'
9001 5' -59.8 NC_002512.2 + 95689 0.71 0.53354
Target:  5'- cGCC-GGGCCUcCGGCGGGGAcggggGGCCg- -3'
miRNA:   3'- aUGGaCCUGGA-GCUGCCCCU-----CUGGag -5'
9001 5' -59.8 NC_002512.2 + 160653 0.71 0.53354
Target:  5'- -cCCUGGAUCgaccgcggCGACGGGGAuucggggggGACUUCg -3'
miRNA:   3'- auGGACCUGGa-------GCUGCCCCU---------CUGGAG- -5'
9001 5' -59.8 NC_002512.2 + 89426 0.71 0.57165
Target:  5'- gGCCUcGGGCgUCGGCGGGGucacguccGGGCC-Ca -3'
miRNA:   3'- aUGGA-CCUGgAGCUGCCCC--------UCUGGaG- -5'
9001 5' -59.8 NC_002512.2 + 104843 0.7 0.590958
Target:  5'- cGgCUGGAg--CGGCGGGGAggGACCUCg -3'
miRNA:   3'- aUgGACCUggaGCUGCCCCU--CUGGAG- -5'
9001 5' -59.8 NC_002512.2 + 199586 0.7 0.590958
Target:  5'- gUACCgcgGGuCgUCGACGcGGGGGCCUCc -3'
miRNA:   3'- -AUGGa--CCuGgAGCUGCcCCUCUGGAG- -5'
9001 5' -59.8 NC_002512.2 + 95915 0.7 0.590958
Target:  5'- gACgaGGACCUCGAUGGGGgugaagGGACggUUCa -3'
miRNA:   3'- aUGgaCCUGGAGCUGCCCC------UCUG--GAG- -5'
9001 5' -59.8 NC_002512.2 + 158918 0.7 0.609403
Target:  5'- gGCCgaguacGGCUUCGGCGGGGGcgccggcGGCCUCu -3'
miRNA:   3'- aUGGac----CUGGAGCUGCCCCU-------CUGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.