Results 21 - 40 of 172 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9002 | 5' | -59 | NC_002512.2 | + | 226631 | 0.66 | 0.875877 |
Target: 5'- -gACGGGaCCGAgccCGCGgaCCGUCGUCAc -3' miRNA: 3'- gaUGCCCcGGCUa--GUGC--GGCGGUAGU- -5' |
|||||||
9002 | 5' | -59 | NC_002512.2 | + | 225586 | 0.66 | 0.874501 |
Target: 5'- -gAgGGGcGCCGGgucuucgaccagCugGCCGUCGUCGu -3' miRNA: 3'- gaUgCCC-CGGCUa-----------GugCGGCGGUAGU- -5' |
|||||||
9002 | 5' | -59 | NC_002512.2 | + | 103348 | 0.66 | 0.87381 |
Target: 5'- --cCGGGGCgGAcggcacggucgaggUCAgGCCGCCGg-- -3' miRNA: 3'- gauGCCCCGgCU--------------AGUgCGGCGGUagu -5' |
|||||||
9002 | 5' | -59 | NC_002512.2 | + | 136186 | 0.66 | 0.868919 |
Target: 5'- -gGCGGGGUCgccggGAUCGCGUcgaCGCCggCGg -3' miRNA: 3'- gaUGCCCCGG-----CUAGUGCG---GCGGuaGU- -5' |
|||||||
9002 | 5' | -59 | NC_002512.2 | + | 199205 | 0.66 | 0.868919 |
Target: 5'- gUACGGGuugucguCCGAcCGCGCCGCCc--- -3' miRNA: 3'- gAUGCCCc------GGCUaGUGCGGCGGuagu -5' |
|||||||
9002 | 5' | -59 | NC_002512.2 | + | 62873 | 0.66 | 0.868919 |
Target: 5'- -cACGGGGCCGcg-ACGCCggugaaGCCGUa- -3' miRNA: 3'- gaUGCCCCGGCuagUGCGG------CGGUAgu -5' |
|||||||
9002 | 5' | -59 | NC_002512.2 | + | 8753 | 0.66 | 0.868919 |
Target: 5'- -gACGGGGaCgCGGUCcucaGCGCCGUCGg-- -3' miRNA: 3'- gaUGCCCC-G-GCUAG----UGCGGCGGUagu -5' |
|||||||
9002 | 5' | -59 | NC_002512.2 | + | 128281 | 0.66 | 0.868919 |
Target: 5'- -gGCGccGGGCCGA-CG-GCCGCCcgCAc -3' miRNA: 3'- gaUGC--CCCGGCUaGUgCGGCGGuaGU- -5' |
|||||||
9002 | 5' | -59 | NC_002512.2 | + | 138957 | 0.66 | 0.867505 |
Target: 5'- -gGCGGcGGCCGcgccggccccguUCGCgGCCGCCAg-- -3' miRNA: 3'- gaUGCC-CCGGCu-----------AGUG-CGGCGGUagu -5' |
|||||||
9002 | 5' | -59 | NC_002512.2 | + | 185333 | 0.66 | 0.861769 |
Target: 5'- uCUGCGucGCCGcccggGUgGcCGCCGCCAUCGc -3' miRNA: 3'- -GAUGCccCGGC-----UAgU-GCGGCGGUAGU- -5' |
|||||||
9002 | 5' | -59 | NC_002512.2 | + | 208711 | 0.66 | 0.861769 |
Target: 5'- --cCGGGGCUcgccgaccaGAUCgggaGCGCCGCCGa-- -3' miRNA: 3'- gauGCCCCGG---------CUAG----UGCGGCGGUagu -5' |
|||||||
9002 | 5' | -59 | NC_002512.2 | + | 183451 | 0.66 | 0.861769 |
Target: 5'- -gAUGGcGGUCGAgaacgUCgGCGCCGCCAcCAa -3' miRNA: 3'- gaUGCC-CCGGCU-----AG-UGCGGCGGUaGU- -5' |
|||||||
9002 | 5' | -59 | NC_002512.2 | + | 129546 | 0.66 | 0.861769 |
Target: 5'- gCUGCGuGGCCGG-CGC-CCGCCAg-- -3' miRNA: 3'- -GAUGCcCCGGCUaGUGcGGCGGUagu -5' |
|||||||
9002 | 5' | -59 | NC_002512.2 | + | 89686 | 0.66 | 0.861769 |
Target: 5'- -gGCGGGGCgagauguaCGGUCGUGUCGCCGa-- -3' miRNA: 3'- gaUGCCCCG--------GCUAGUGCGGCGGUagu -5' |
|||||||
9002 | 5' | -59 | NC_002512.2 | + | 175774 | 0.66 | 0.861769 |
Target: 5'- -aGCGGGG-UGGUCACGUCGCa---- -3' miRNA: 3'- gaUGCCCCgGCUAGUGCGGCGguagu -5' |
|||||||
9002 | 5' | -59 | NC_002512.2 | + | 185003 | 0.66 | 0.861769 |
Target: 5'- gCUGCGGcccgguGCCGcuGUacaGCGCCGUCGUCGg -3' miRNA: 3'- -GAUGCCc-----CGGC--UAg--UGCGGCGGUAGU- -5' |
|||||||
9002 | 5' | -59 | NC_002512.2 | + | 215087 | 0.66 | 0.861769 |
Target: 5'- -gGCGGGaCCGAggacuUCGuCGCCGCCG-CGg -3' miRNA: 3'- gaUGCCCcGGCU-----AGU-GCGGCGGUaGU- -5' |
|||||||
9002 | 5' | -59 | NC_002512.2 | + | 8723 | 0.66 | 0.854431 |
Target: 5'- --uCGGucGGCCGcgCGCGCCcGcCCGUCGa -3' miRNA: 3'- gauGCC--CCGGCuaGUGCGG-C-GGUAGU- -5' |
|||||||
9002 | 5' | -59 | NC_002512.2 | + | 21076 | 0.66 | 0.854431 |
Target: 5'- -cACGGGcGgCGGUCccgcuccgggGCGaCCGCCGUCu -3' miRNA: 3'- gaUGCCC-CgGCUAG----------UGC-GGCGGUAGu -5' |
|||||||
9002 | 5' | -59 | NC_002512.2 | + | 77477 | 0.66 | 0.854431 |
Target: 5'- --cCGGGGaucCCGcgCACGCuCGCCcgCGu -3' miRNA: 3'- gauGCCCC---GGCuaGUGCG-GCGGuaGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home