miRNA display CGI


Results 21 - 40 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9002 5' -59 NC_002512.2 + 8723 0.66 0.854431
Target:  5'- --uCGGucGGCCGcgCGCGCCcGcCCGUCGa -3'
miRNA:   3'- gauGCC--CCGGCuaGUGCGG-C-GGUAGU- -5'
9002 5' -59 NC_002512.2 + 154596 0.66 0.853687
Target:  5'- -gACGGcGGCaucGUCGCcgccgccGCCGCCGUCGc -3'
miRNA:   3'- gaUGCC-CCGgc-UAGUG-------CGGCGGUAGU- -5'
9002 5' -59 NC_002512.2 + 185003 0.66 0.861769
Target:  5'- gCUGCGGcccgguGCCGcuGUacaGCGCCGUCGUCGg -3'
miRNA:   3'- -GAUGCCc-----CGGC--UAg--UGCGGCGGUAGU- -5'
9002 5' -59 NC_002512.2 + 138957 0.66 0.867505
Target:  5'- -gGCGGcGGCCGcgccggccccguUCGCgGCCGCCAg-- -3'
miRNA:   3'- gaUGCC-CCGGCu-----------AGUG-CGGCGGUagu -5'
9002 5' -59 NC_002512.2 + 128281 0.66 0.868919
Target:  5'- -gGCGccGGGCCGA-CG-GCCGCCcgCAc -3'
miRNA:   3'- gaUGC--CCCGGCUaGUgCGGCGGuaGU- -5'
9002 5' -59 NC_002512.2 + 185333 0.66 0.861769
Target:  5'- uCUGCGucGCCGcccggGUgGcCGCCGCCAUCGc -3'
miRNA:   3'- -GAUGCccCGGC-----UAgU-GCGGCGGUAGU- -5'
9002 5' -59 NC_002512.2 + 109081 0.66 0.875877
Target:  5'- --cCGGGuCCGAgagacCGCCGCCGUCc -3'
miRNA:   3'- gauGCCCcGGCUagu--GCGGCGGUAGu -5'
9002 5' -59 NC_002512.2 + 226631 0.66 0.875877
Target:  5'- -gACGGGaCCGAgccCGCGgaCCGUCGUCAc -3'
miRNA:   3'- gaUGCCCcGGCUa--GUGC--GGCGGUAGU- -5'
9002 5' -59 NC_002512.2 + 103348 0.66 0.87381
Target:  5'- --cCGGGGCgGAcggcacggucgaggUCAgGCCGCCGg-- -3'
miRNA:   3'- gauGCCCCGgCU--------------AGUgCGGCGGUagu -5'
9002 5' -59 NC_002512.2 + 208711 0.66 0.861769
Target:  5'- --cCGGGGCUcgccgaccaGAUCgggaGCGCCGCCGa-- -3'
miRNA:   3'- gauGCCCCGG---------CUAG----UGCGGCGGUagu -5'
9002 5' -59 NC_002512.2 + 193795 0.66 0.875877
Target:  5'- gUugGGcccuGGCCcauuGGUCGCGCCGCUucgggGUCGg -3'
miRNA:   3'- gAugCC----CCGG----CUAGUGCGGCGG-----UAGU- -5'
9002 5' -59 NC_002512.2 + 225586 0.66 0.874501
Target:  5'- -gAgGGGcGCCGGgucuucgaccagCugGCCGUCGUCGu -3'
miRNA:   3'- gaUgCCC-CGGCUa-----------GugCGGCGGUAGU- -5'
9002 5' -59 NC_002512.2 + 100344 0.66 0.853687
Target:  5'- -gGCGGGcGCCGGcCACGCagcacggCGUCGUCc -3'
miRNA:   3'- gaUGCCC-CGGCUaGUGCG-------GCGGUAGu -5'
9002 5' -59 NC_002512.2 + 215087 0.66 0.861769
Target:  5'- -gGCGGGaCCGAggacuUCGuCGCCGCCG-CGg -3'
miRNA:   3'- gaUGCCCcGGCU-----AGU-GCGGCGGUaGU- -5'
9002 5' -59 NC_002512.2 + 40294 0.66 0.879957
Target:  5'- --uCGGGGUCGAccucagagccuacaUCuguugcgACGUCGCCGUCGc -3'
miRNA:   3'- gauGCCCCGGCU--------------AG-------UGCGGCGGUAGU- -5'
9002 5' -59 NC_002512.2 + 218909 0.66 0.875877
Target:  5'- -cGCGGGGCgGcUCGUGCCGCUg--- -3'
miRNA:   3'- gaUGCCCCGgCuAGUGCGGCGGuagu -5'
9002 5' -59 NC_002512.2 + 199205 0.66 0.868919
Target:  5'- gUACGGGuugucguCCGAcCGCGCCGCCc--- -3'
miRNA:   3'- gAUGCCCc------GGCUaGUGCGGCGGuagu -5'
9002 5' -59 NC_002512.2 + 183451 0.66 0.861769
Target:  5'- -gAUGGcGGUCGAgaacgUCgGCGCCGCCAcCAa -3'
miRNA:   3'- gaUGCC-CCGGCU-----AG-UGCGGCGGUaGU- -5'
9002 5' -59 NC_002512.2 + 175774 0.66 0.861769
Target:  5'- -aGCGGGG-UGGUCACGUCGCa---- -3'
miRNA:   3'- gaUGCCCCgGCUAGUGCGGCGguagu -5'
9002 5' -59 NC_002512.2 + 88145 0.66 0.882637
Target:  5'- ---aGGGGaCGAUC-CGCCcgugGCCGUCGu -3'
miRNA:   3'- gaugCCCCgGCUAGuGCGG----CGGUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.