miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9002 5' -59 NC_002512.2 + 113414 0.66 0.889196
Target:  5'- -cGCGuGGGCCgccggGAUCAcCGCC-CCGUCc -3'
miRNA:   3'- gaUGC-CCCGG-----CUAGU-GCGGcGGUAGu -5'
9002 5' -59 NC_002512.2 + 200439 0.66 0.889196
Target:  5'- ---aGGGGUCGucguagcgCAgGCCGCCGUUu -3'
miRNA:   3'- gaugCCCCGGCua------GUgCGGCGGUAGu -5'
9002 5' -59 NC_002512.2 + 110953 0.66 0.875877
Target:  5'- --cCGGGGCCa---GCGCCGUCAgCAc -3'
miRNA:   3'- gauGCCCCGGcuagUGCGGCGGUaGU- -5'
9002 5' -59 NC_002512.2 + 73609 0.66 0.889196
Target:  5'- -gACGGGccacucggagaaGUCGAagGCGCCGCCGggcUCGu -3'
miRNA:   3'- gaUGCCC------------CGGCUagUGCGGCGGU---AGU- -5'
9002 5' -59 NC_002512.2 + 72704 0.66 0.889196
Target:  5'- -cAUGcGGUCGAucgUCGCGCCGCCGc-- -3'
miRNA:   3'- gaUGCcCCGGCU---AGUGCGGCGGUagu -5'
9002 5' -59 NC_002512.2 + 89686 0.66 0.861769
Target:  5'- -gGCGGGGCgagauguaCGGUCGUGUCGCCGa-- -3'
miRNA:   3'- gaUGCCCCG--------GCUAGUGCGGCGGUagu -5'
9002 5' -59 NC_002512.2 + 27757 0.66 0.882637
Target:  5'- -gGCGGcGGCCGAgacCGgCGCCAcCAg -3'
miRNA:   3'- gaUGCC-CCGGCUaguGCgGCGGUaGU- -5'
9002 5' -59 NC_002512.2 + 111112 0.66 0.889196
Target:  5'- --cCGGcGGCgGAg-GCGCCGCCcgCGg -3'
miRNA:   3'- gauGCC-CCGgCUagUGCGGCGGuaGU- -5'
9002 5' -59 NC_002512.2 + 154596 0.66 0.853687
Target:  5'- -gACGGcGGCaucGUCGCcgccgccGCCGCCGUCGc -3'
miRNA:   3'- gaUGCC-CCGgc-UAGUG-------CGGCGGUAGU- -5'
9002 5' -59 NC_002512.2 + 8723 0.66 0.854431
Target:  5'- --uCGGucGGCCGcgCGCGCCcGcCCGUCGa -3'
miRNA:   3'- gauGCC--CCGGCuaGUGCGG-C-GGUAGU- -5'
9002 5' -59 NC_002512.2 + 215618 0.66 0.889196
Target:  5'- uCUGCGGcagcguGGCCGAgcUCuuCGCCguggggcugcggGCCGUCAa -3'
miRNA:   3'- -GAUGCC------CCGGCU--AGu-GCGG------------CGGUAGU- -5'
9002 5' -59 NC_002512.2 + 16706 0.66 0.875877
Target:  5'- -gGCGGuaGCCGAUCGUGCCGaCCAcgCAg -3'
miRNA:   3'- gaUGCCc-CGGCUAGUGCGGC-GGUa-GU- -5'
9002 5' -59 NC_002512.2 + 8753 0.66 0.868919
Target:  5'- -gACGGGGaCgCGGUCcucaGCGCCGUCGg-- -3'
miRNA:   3'- gaUGCCCC-G-GCUAG----UGCGGCGGUagu -5'
9002 5' -59 NC_002512.2 + 110668 0.66 0.889196
Target:  5'- -cGCGGGcaGCCGGUCcuggugcucgcGCaGCCGCCG-CAg -3'
miRNA:   3'- gaUGCCC--CGGCUAG-----------UG-CGGCGGUaGU- -5'
9002 5' -59 NC_002512.2 + 21076 0.66 0.854431
Target:  5'- -cACGGGcGgCGGUCccgcuccgggGCGaCCGCCGUCu -3'
miRNA:   3'- gaUGCCC-CgGCUAG----------UGC-GGCGGUAGu -5'
9002 5' -59 NC_002512.2 + 100344 0.66 0.853687
Target:  5'- -gGCGGGcGCCGGcCACGCagcacggCGUCGUCc -3'
miRNA:   3'- gaUGCCC-CGGCUaGUGCG-------GCGGUAGu -5'
9002 5' -59 NC_002512.2 + 3149 0.66 0.889196
Target:  5'- --cCGGaGcCCGGUCcCGCCGUCGUCGc -3'
miRNA:   3'- gauGCCcC-GGCUAGuGCGGCGGUAGU- -5'
9002 5' -59 NC_002512.2 + 136186 0.66 0.868919
Target:  5'- -gGCGGGGUCgccggGAUCGCGUcgaCGCCggCGg -3'
miRNA:   3'- gaUGCCCCGG-----CUAGUGCG---GCGGuaGU- -5'
9002 5' -59 NC_002512.2 + 149444 0.66 0.891763
Target:  5'- -cGCGGGGggagaggaaggggacCCGGg-ACGCCGCCGaCAg -3'
miRNA:   3'- gaUGCCCC---------------GGCUagUGCGGCGGUaGU- -5'
9002 5' -59 NC_002512.2 + 62873 0.66 0.868919
Target:  5'- -cACGGGGCCGcg-ACGCCggugaaGCCGUa- -3'
miRNA:   3'- gaUGCCCCGGCuagUGCGG------CGGUAgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.