miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9002 5' -59 NC_002512.2 + 82230 0.78 0.258721
Target:  5'- -aGCGGGGCCGGUgaCGguagcgggagcggcCGCCGCCGUCGu -3'
miRNA:   3'- gaUGCCCCGGCUA--GU--------------GCGGCGGUAGU- -5'
9002 5' -59 NC_002512.2 + 44486 0.7 0.662945
Target:  5'- --cCGGGGCCGGgcggagaagacggccUCGCaGCCGCCGcCGa -3'
miRNA:   3'- gauGCCCCGGCU---------------AGUG-CGGCGGUaGU- -5'
9002 5' -59 NC_002512.2 + 123147 0.7 0.659059
Target:  5'- -gACGGGGCgGcg-GCGCCGCgAUCGc -3'
miRNA:   3'- gaUGCCCCGgCuagUGCGGCGgUAGU- -5'
9002 5' -59 NC_002512.2 + 88110 0.71 0.629852
Target:  5'- -cGCGGGGCUGAUCACGgucagggucgacUCGUCGUa- -3'
miRNA:   3'- gaUGCCCCGGCUAGUGC------------GGCGGUAgu -5'
9002 5' -59 NC_002512.2 + 111193 0.71 0.620109
Target:  5'- -gGauGGGCaCGAUCGCGCCGaUCAUCu -3'
miRNA:   3'- gaUgcCCCG-GCUAGUGCGGC-GGUAGu -5'
9002 5' -59 NC_002512.2 + 125026 0.71 0.620109
Target:  5'- -cGCGGGGCCGAg---GUCGCCGUgAg -3'
miRNA:   3'- gaUGCCCCGGCUagugCGGCGGUAgU- -5'
9002 5' -59 NC_002512.2 + 123099 0.71 0.620109
Target:  5'- -aGCGGGuCCGGcggaaccgUCcCGCCGCCGUCGg -3'
miRNA:   3'- gaUGCCCcGGCU--------AGuGCGGCGGUAGU- -5'
9002 5' -59 NC_002512.2 + 6348 0.71 0.610376
Target:  5'- -cGCGGGGCCGG-CGgGCCGCgGgcgCGu -3'
miRNA:   3'- gaUGCCCCGGCUaGUgCGGCGgUa--GU- -5'
9002 5' -59 NC_002512.2 + 139255 0.71 0.590959
Target:  5'- -cGCGGcGCCgGGUCGCGCCGCCcggCGc -3'
miRNA:   3'- gaUGCCcCGG-CUAGUGCGGCGGua-GU- -5'
9002 5' -59 NC_002512.2 + 100313 0.71 0.590959
Target:  5'- -gACGGGGCCGAcgUCcCGgCGCC-UCGg -3'
miRNA:   3'- gaUGCCCCGGCU--AGuGCgGCGGuAGU- -5'
9002 5' -59 NC_002512.2 + 55678 0.72 0.552497
Target:  5'- -gGCGGGGCgcUGAaCGCGCCGCUGUUc -3'
miRNA:   3'- gaUGCCCCG--GCUaGUGCGGCGGUAGu -5'
9002 5' -59 NC_002512.2 + 97341 0.73 0.505561
Target:  5'- -gGCGGagaGGCCGAcgGCGCCGCCcgCGg -3'
miRNA:   3'- gaUGCC---CCGGCUagUGCGGCGGuaGU- -5'
9002 5' -59 NC_002512.2 + 134666 0.74 0.460421
Target:  5'- gUGCGGGGCCGA-CGCGauCCGUCAcCAg -3'
miRNA:   3'- gAUGCCCCGGCUaGUGC--GGCGGUaGU- -5'
9002 5' -59 NC_002512.2 + 4821 0.74 0.449034
Target:  5'- gCUGCGGGacguguugcgcgccGCCGAggaGCGCgGCCAUCGc -3'
miRNA:   3'- -GAUGCCC--------------CGGCUag-UGCGgCGGUAGU- -5'
9002 5' -59 NC_002512.2 + 111833 0.74 0.442968
Target:  5'- --cCGGGGuCCGGUggucguagaGCGCCGCCGUCGc -3'
miRNA:   3'- gauGCCCC-GGCUAg--------UGCGGCGGUAGU- -5'
9002 5' -59 NC_002512.2 + 28242 0.74 0.442968
Target:  5'- --cCGGGGCCG-UCGCGCCGCgAg-- -3'
miRNA:   3'- gauGCCCCGGCuAGUGCGGCGgUagu -5'
9002 5' -59 NC_002512.2 + 71597 0.75 0.417506
Target:  5'- cCUugGGGGCCGG-CACGCCcuCCAgcuUCAu -3'
miRNA:   3'- -GAugCCCCGGCUaGUGCGGc-GGU---AGU- -5'
9002 5' -59 NC_002512.2 + 75566 0.75 0.384983
Target:  5'- --cCGGGGCgGggC-CGCCGCCGUCGc -3'
miRNA:   3'- gauGCCCCGgCuaGuGCGGCGGUAGU- -5'
9002 5' -59 NC_002512.2 + 96945 0.77 0.311328
Target:  5'- -aGCGGGGC--GUCGCGCCGaCCGUCGu -3'
miRNA:   3'- gaUGCCCCGgcUAGUGCGGC-GGUAGU- -5'
9002 5' -59 NC_002512.2 + 90929 0.82 0.155068
Target:  5'- -aACGGGGCCGGcgCGgcCGCCGCCGUCGu -3'
miRNA:   3'- gaUGCCCCGGCUa-GU--GCGGCGGUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.