miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9002 5' -59 NC_002512.2 + 191 0.68 0.77206
Target:  5'- -gGCGuGGGCUGcccuggccccccGUCGCGCCGCUcUCu -3'
miRNA:   3'- gaUGC-CCCGGC------------UAGUGCGGCGGuAGu -5'
9002 5' -59 NC_002512.2 + 2176 0.68 0.789678
Target:  5'- --uCGGGGaCCGuaccgCGCccccGCCGCCGUCGu -3'
miRNA:   3'- gauGCCCC-GGCua---GUG----CGGCGGUAGU- -5'
9002 5' -59 NC_002512.2 + 3149 0.66 0.889196
Target:  5'- --cCGGaGcCCGGUCcCGCCGUCGUCGc -3'
miRNA:   3'- gauGCCcC-GGCUAGuGCGGCGGUAGU- -5'
9002 5' -59 NC_002512.2 + 3261 0.67 0.823312
Target:  5'- -cGCGGGcUCGGUCccgucgcuGCGUCGCCGUCc -3'
miRNA:   3'- gaUGCCCcGGCUAG--------UGCGGCGGUAGu -5'
9002 5' -59 NC_002512.2 + 4821 0.74 0.449034
Target:  5'- gCUGCGGGacguguugcgcgccGCCGAggaGCGCgGCCAUCGc -3'
miRNA:   3'- -GAUGCCC--------------CGGCUag-UGCGgCGGUAGU- -5'
9002 5' -59 NC_002512.2 + 6348 0.71 0.610376
Target:  5'- -cGCGGGGCCGG-CGgGCCGCgGgcgCGu -3'
miRNA:   3'- gaUGCCCCGGCUaGUgCGGCGgUa--GU- -5'
9002 5' -59 NC_002512.2 + 8723 0.66 0.854431
Target:  5'- --uCGGucGGCCGcgCGCGCCcGcCCGUCGa -3'
miRNA:   3'- gauGCC--CCGGCuaGUGCGG-C-GGUAGU- -5'
9002 5' -59 NC_002512.2 + 8753 0.66 0.868919
Target:  5'- -gACGGGGaCgCGGUCcucaGCGCCGUCGg-- -3'
miRNA:   3'- gaUGCCCC-G-GCUAG----UGCGGCGGUagu -5'
9002 5' -59 NC_002512.2 + 10420 0.68 0.763077
Target:  5'- ---aGGGGCaCGAccgCGuCGUCGCCGUCGg -3'
miRNA:   3'- gaugCCCCG-GCUa--GU-GCGGCGGUAGU- -5'
9002 5' -59 NC_002512.2 + 16500 0.67 0.83687
Target:  5'- -aGCgGGGGCCGGaccgacgauagcacUguCGCCGCCAgcgCGg -3'
miRNA:   3'- gaUG-CCCCGGCU--------------AguGCGGCGGUa--GU- -5'
9002 5' -59 NC_002512.2 + 16706 0.66 0.875877
Target:  5'- -gGCGGuaGCCGAUCGUGCCGaCCAcgCAg -3'
miRNA:   3'- gaUGCCc-CGGCUAGUGCGGC-GGUa-GU- -5'
9002 5' -59 NC_002512.2 + 21076 0.66 0.854431
Target:  5'- -cACGGGcGgCGGUCccgcuccgggGCGaCCGCCGUCu -3'
miRNA:   3'- gaUGCCC-CgGCUAG----------UGC-GGCGGUAGu -5'
9002 5' -59 NC_002512.2 + 27757 0.66 0.882637
Target:  5'- -gGCGGcGGCCGAgacCGgCGCCAcCAg -3'
miRNA:   3'- gaUGCC-CCGGCUaguGCgGCGGUaGU- -5'
9002 5' -59 NC_002512.2 + 27999 0.68 0.77206
Target:  5'- -cGCGGGGagaCGGagaagC-CGCCGCCGUCc -3'
miRNA:   3'- gaUGCCCCg--GCUa----GuGCGGCGGUAGu -5'
9002 5' -59 NC_002512.2 + 28242 0.74 0.442968
Target:  5'- --cCGGGGCCG-UCGCGCCGCgAg-- -3'
miRNA:   3'- gauGCCCCGGCuAGUGCGGCGgUagu -5'
9002 5' -59 NC_002512.2 + 34855 0.67 0.831345
Target:  5'- -cGCGGcGGCUucuUCGuCGCCGUCGUCGc -3'
miRNA:   3'- gaUGCC-CCGGcu-AGU-GCGGCGGUAGU- -5'
9002 5' -59 NC_002512.2 + 35596 0.68 0.763077
Target:  5'- cCUGucGGGUCGGaacgCugGCCGCCAUCu -3'
miRNA:   3'- -GAUgcCCCGGCUa---GugCGGCGGUAGu -5'
9002 5' -59 NC_002512.2 + 35931 0.67 0.834512
Target:  5'- --cCGGcGGCCucUCGCGCCagacgacguuccccgGCCGUCAg -3'
miRNA:   3'- gauGCC-CCGGcuAGUGCGG---------------CGGUAGU- -5'
9002 5' -59 NC_002512.2 + 40294 0.66 0.879957
Target:  5'- --uCGGGGUCGAccucagagccuacaUCuguugcgACGUCGCCGUCGc -3'
miRNA:   3'- gauGCCCCGGCU--------------AG-------UGCGGCGGUAGU- -5'
9002 5' -59 NC_002512.2 + 44486 0.7 0.662945
Target:  5'- --cCGGGGCCGGgcggagaagacggccUCGCaGCCGCCGcCGa -3'
miRNA:   3'- gauGCCCCGGCU---------------AGUG-CGGCGGUaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.