Results 1 - 20 of 172 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9002 | 5' | -59 | NC_002512.2 | + | 183297 | 1.07 | 0.003165 |
Target: 5'- uCUACGGGGCCGAUCACGCCGCCAUCAc -3' miRNA: 3'- -GAUGCCCCGGCUAGUGCGGCGGUAGU- -5' |
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9002 | 5' | -59 | NC_002512.2 | + | 90929 | 0.82 | 0.155068 |
Target: 5'- -aACGGGGCCGGcgCGgcCGCCGCCGUCGu -3' miRNA: 3'- gaUGCCCCGGCUa-GU--GCGGCGGUAGU- -5' |
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9002 | 5' | -59 | NC_002512.2 | + | 82230 | 0.78 | 0.258721 |
Target: 5'- -aGCGGGGCCGGUgaCGguagcgggagcggcCGCCGCCGUCGu -3' miRNA: 3'- gaUGCCCCGGCUA--GU--------------GCGGCGGUAGU- -5' |
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9002 | 5' | -59 | NC_002512.2 | + | 96945 | 0.77 | 0.311328 |
Target: 5'- -aGCGGGGC--GUCGCGCCGaCCGUCGu -3' miRNA: 3'- gaUGCCCCGgcUAGUGCGGC-GGUAGU- -5' |
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9002 | 5' | -59 | NC_002512.2 | + | 195810 | 0.77 | 0.311328 |
Target: 5'- gCUGCGGGGaCaucGUCgACGCCGCCGUCGu -3' miRNA: 3'- -GAUGCCCC-Ggc-UAG-UGCGGCGGUAGU- -5' |
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9002 | 5' | -59 | NC_002512.2 | + | 75566 | 0.75 | 0.384983 |
Target: 5'- --cCGGGGCgGggC-CGCCGCCGUCGc -3' miRNA: 3'- gauGCCCCGgCuaGuGCGGCGGUAGU- -5' |
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9002 | 5' | -59 | NC_002512.2 | + | 224710 | 0.75 | 0.384983 |
Target: 5'- cCUGCuGGGGCCGGccgccgccccggUCGCGCCGCUgccguucuAUCAu -3' miRNA: 3'- -GAUG-CCCCGGCU------------AGUGCGGCGG--------UAGU- -5' |
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9002 | 5' | -59 | NC_002512.2 | + | 215813 | 0.75 | 0.384983 |
Target: 5'- uCUACGGGGCCGGggacuccccUCccggccggaacGCGCCGCCGccuUCGg -3' miRNA: 3'- -GAUGCCCCGGCU---------AG-----------UGCGGCGGU---AGU- -5' |
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9002 | 5' | -59 | NC_002512.2 | + | 71597 | 0.75 | 0.417506 |
Target: 5'- cCUugGGGGCCGG-CACGCCcuCCAgcuUCAu -3' miRNA: 3'- -GAugCCCCGGCUaGUGCGGc-GGU---AGU- -5' |
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9002 | 5' | -59 | NC_002512.2 | + | 149158 | 0.74 | 0.434382 |
Target: 5'- -cGCGGGGCCGG---UGCCGCCcgCGg -3' miRNA: 3'- gaUGCCCCGGCUaguGCGGCGGuaGU- -5' |
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9002 | 5' | -59 | NC_002512.2 | + | 28242 | 0.74 | 0.442968 |
Target: 5'- --cCGGGGCCG-UCGCGCCGCgAg-- -3' miRNA: 3'- gauGCCCCGGCuAGUGCGGCGgUagu -5' |
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9002 | 5' | -59 | NC_002512.2 | + | 111833 | 0.74 | 0.442968 |
Target: 5'- --cCGGGGuCCGGUggucguagaGCGCCGCCGUCGc -3' miRNA: 3'- gauGCCCC-GGCUAg--------UGCGGCGGUAGU- -5' |
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9002 | 5' | -59 | NC_002512.2 | + | 4821 | 0.74 | 0.449034 |
Target: 5'- gCUGCGGGacguguugcgcgccGCCGAggaGCGCgGCCAUCGc -3' miRNA: 3'- -GAUGCCC--------------CGGCUag-UGCGgCGGUAGU- -5' |
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9002 | 5' | -59 | NC_002512.2 | + | 130884 | 0.74 | 0.460421 |
Target: 5'- cCUAuCGGGGCCGcgCAgagGCCGgCCAUCGu -3' miRNA: 3'- -GAU-GCCCCGGCuaGUg--CGGC-GGUAGU- -5' |
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9002 | 5' | -59 | NC_002512.2 | + | 205031 | 0.74 | 0.460421 |
Target: 5'- --uCGGGGCCGcGUC-CGCCGCCGa-- -3' miRNA: 3'- gauGCCCCGGC-UAGuGCGGCGGUagu -5' |
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9002 | 5' | -59 | NC_002512.2 | + | 134666 | 0.74 | 0.460421 |
Target: 5'- gUGCGGGGCCGA-CGCGauCCGUCAcCAg -3' miRNA: 3'- gAUGCCCCGGCUaGUGC--GGCGGUaGU- -5' |
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9002 | 5' | -59 | NC_002512.2 | + | 124809 | 0.73 | 0.501878 |
Target: 5'- -gACGGaGCCGGgagacuaccccgaCACGCCGCCGUCGc -3' miRNA: 3'- gaUGCCcCGGCUa------------GUGCGGCGGUAGU- -5' |
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9002 | 5' | -59 | NC_002512.2 | + | 97341 | 0.73 | 0.505561 |
Target: 5'- -gGCGGagaGGCCGAcgGCGCCGCCcgCGg -3' miRNA: 3'- gaUGCC---CCGGCUagUGCGGCGGuaGU- -5' |
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9002 | 5' | -59 | NC_002512.2 | + | 55678 | 0.72 | 0.552497 |
Target: 5'- -gGCGGGGCgcUGAaCGCGCCGCUGUUc -3' miRNA: 3'- gaUGCCCCG--GCUaGUGCGGCGGUAGu -5' |
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9002 | 5' | -59 | NC_002512.2 | + | 81806 | 0.72 | 0.581288 |
Target: 5'- -cACGaGGGCCGA-CGCGCCGCgAg-- -3' miRNA: 3'- gaUGC-CCCGGCUaGUGCGGCGgUagu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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