miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9002 5' -59 NC_002512.2 + 183297 1.07 0.003165
Target:  5'- uCUACGGGGCCGAUCACGCCGCCAUCAc -3'
miRNA:   3'- -GAUGCCCCGGCUAGUGCGGCGGUAGU- -5'
9002 5' -59 NC_002512.2 + 90929 0.82 0.155068
Target:  5'- -aACGGGGCCGGcgCGgcCGCCGCCGUCGu -3'
miRNA:   3'- gaUGCCCCGGCUa-GU--GCGGCGGUAGU- -5'
9002 5' -59 NC_002512.2 + 82230 0.78 0.258721
Target:  5'- -aGCGGGGCCGGUgaCGguagcgggagcggcCGCCGCCGUCGu -3'
miRNA:   3'- gaUGCCCCGGCUA--GU--------------GCGGCGGUAGU- -5'
9002 5' -59 NC_002512.2 + 96945 0.77 0.311328
Target:  5'- -aGCGGGGC--GUCGCGCCGaCCGUCGu -3'
miRNA:   3'- gaUGCCCCGgcUAGUGCGGC-GGUAGU- -5'
9002 5' -59 NC_002512.2 + 195810 0.77 0.311328
Target:  5'- gCUGCGGGGaCaucGUCgACGCCGCCGUCGu -3'
miRNA:   3'- -GAUGCCCC-Ggc-UAG-UGCGGCGGUAGU- -5'
9002 5' -59 NC_002512.2 + 75566 0.75 0.384983
Target:  5'- --cCGGGGCgGggC-CGCCGCCGUCGc -3'
miRNA:   3'- gauGCCCCGgCuaGuGCGGCGGUAGU- -5'
9002 5' -59 NC_002512.2 + 224710 0.75 0.384983
Target:  5'- cCUGCuGGGGCCGGccgccgccccggUCGCGCCGCUgccguucuAUCAu -3'
miRNA:   3'- -GAUG-CCCCGGCU------------AGUGCGGCGG--------UAGU- -5'
9002 5' -59 NC_002512.2 + 215813 0.75 0.384983
Target:  5'- uCUACGGGGCCGGggacuccccUCccggccggaacGCGCCGCCGccuUCGg -3'
miRNA:   3'- -GAUGCCCCGGCU---------AG-----------UGCGGCGGU---AGU- -5'
9002 5' -59 NC_002512.2 + 71597 0.75 0.417506
Target:  5'- cCUugGGGGCCGG-CACGCCcuCCAgcuUCAu -3'
miRNA:   3'- -GAugCCCCGGCUaGUGCGGc-GGU---AGU- -5'
9002 5' -59 NC_002512.2 + 149158 0.74 0.434382
Target:  5'- -cGCGGGGCCGG---UGCCGCCcgCGg -3'
miRNA:   3'- gaUGCCCCGGCUaguGCGGCGGuaGU- -5'
9002 5' -59 NC_002512.2 + 28242 0.74 0.442968
Target:  5'- --cCGGGGCCG-UCGCGCCGCgAg-- -3'
miRNA:   3'- gauGCCCCGGCuAGUGCGGCGgUagu -5'
9002 5' -59 NC_002512.2 + 111833 0.74 0.442968
Target:  5'- --cCGGGGuCCGGUggucguagaGCGCCGCCGUCGc -3'
miRNA:   3'- gauGCCCC-GGCUAg--------UGCGGCGGUAGU- -5'
9002 5' -59 NC_002512.2 + 4821 0.74 0.449034
Target:  5'- gCUGCGGGacguguugcgcgccGCCGAggaGCGCgGCCAUCGc -3'
miRNA:   3'- -GAUGCCC--------------CGGCUag-UGCGgCGGUAGU- -5'
9002 5' -59 NC_002512.2 + 130884 0.74 0.460421
Target:  5'- cCUAuCGGGGCCGcgCAgagGCCGgCCAUCGu -3'
miRNA:   3'- -GAU-GCCCCGGCuaGUg--CGGC-GGUAGU- -5'
9002 5' -59 NC_002512.2 + 205031 0.74 0.460421
Target:  5'- --uCGGGGCCGcGUC-CGCCGCCGa-- -3'
miRNA:   3'- gauGCCCCGGC-UAGuGCGGCGGUagu -5'
9002 5' -59 NC_002512.2 + 134666 0.74 0.460421
Target:  5'- gUGCGGGGCCGA-CGCGauCCGUCAcCAg -3'
miRNA:   3'- gAUGCCCCGGCUaGUGC--GGCGGUaGU- -5'
9002 5' -59 NC_002512.2 + 124809 0.73 0.501878
Target:  5'- -gACGGaGCCGGgagacuaccccgaCACGCCGCCGUCGc -3'
miRNA:   3'- gaUGCCcCGGCUa------------GUGCGGCGGUAGU- -5'
9002 5' -59 NC_002512.2 + 97341 0.73 0.505561
Target:  5'- -gGCGGagaGGCCGAcgGCGCCGCCcgCGg -3'
miRNA:   3'- gaUGCC---CCGGCUagUGCGGCGGuaGU- -5'
9002 5' -59 NC_002512.2 + 55678 0.72 0.552497
Target:  5'- -gGCGGGGCgcUGAaCGCGCCGCUGUUc -3'
miRNA:   3'- gaUGCCCCG--GCUaGUGCGGCGGUAGu -5'
9002 5' -59 NC_002512.2 + 81806 0.72 0.581288
Target:  5'- -cACGaGGGCCGA-CGCGCCGCgAg-- -3'
miRNA:   3'- gaUGC-CCCGGCUaGUGCGGCGgUagu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.