Results 1 - 20 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9005 | 3' | -59.4 | NC_002512.2 | + | 180031 | 1.09 | 0.002275 |
Target: 5'- cGCUCGGGAUCUCCGAUCCCAGGCGGUg -3' miRNA: 3'- -CGAGCCCUAGAGGCUAGGGUCCGCCA- -5' |
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9005 | 3' | -59.4 | NC_002512.2 | + | 218293 | 0.76 | 0.326381 |
Target: 5'- cCUCGGGGUCcCCGGcCCUGGGCGGc -3' miRNA: 3'- cGAGCCCUAGaGGCUaGGGUCCGCCa -5' |
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9005 | 3' | -59.4 | NC_002512.2 | + | 182009 | 0.75 | 0.410022 |
Target: 5'- cCUCGGGGUCa--GG-CCCAGGCGGUa -3' miRNA: 3'- cGAGCCCUAGaggCUaGGGUCCGCCA- -5' |
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9005 | 3' | -59.4 | NC_002512.2 | + | 128794 | 0.74 | 0.426601 |
Target: 5'- cCUCuGGGUCUCCGGcguggUCCgCGGGCGGg -3' miRNA: 3'- cGAGcCCUAGAGGCU-----AGG-GUCCGCCa -5' |
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9005 | 3' | -59.4 | NC_002512.2 | + | 134726 | 0.73 | 0.478613 |
Target: 5'- gGC-CGGGGgaaggCUCCGGUCCUcgacccgccgGGGCGGa -3' miRNA: 3'- -CGaGCCCUa----GAGGCUAGGG----------UCCGCCa -5' |
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9005 | 3' | -59.4 | NC_002512.2 | + | 15153 | 0.73 | 0.496636 |
Target: 5'- cGCgcaGGGGUUUuuGAagCCCGGGCGGg -3' miRNA: 3'- -CGag-CCCUAGAggCUa-GGGUCCGCCa -5' |
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9005 | 3' | -59.4 | NC_002512.2 | + | 142237 | 0.73 | 0.505762 |
Target: 5'- cGCggaacgCGGGAUCUCCGAUCUgGGaucCGGUc -3' miRNA: 3'- -CGa-----GCCCUAGAGGCUAGGgUCc--GCCA- -5' |
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9005 | 3' | -59.4 | NC_002512.2 | + | 173326 | 0.72 | 0.524224 |
Target: 5'- cGCcugCGGGGUCUUCGGUCCC-GGCa-- -3' miRNA: 3'- -CGa--GCCCUAGAGGCUAGGGuCCGcca -5' |
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9005 | 3' | -59.4 | NC_002512.2 | + | 64422 | 0.72 | 0.533551 |
Target: 5'- aCUCGGGAUCuUCCGAUCgaUCAGaaaGCGGg -3' miRNA: 3'- cGAGCCCUAG-AGGCUAG--GGUC---CGCCa -5' |
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9005 | 3' | -59.4 | NC_002512.2 | + | 152839 | 0.71 | 0.580966 |
Target: 5'- -aUCGGGc-CUCgCGGUcCCCAGGCGGa -3' miRNA: 3'- cgAGCCCuaGAG-GCUA-GGGUCCGCCa -5' |
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9005 | 3' | -59.4 | NC_002512.2 | + | 130661 | 0.71 | 0.580966 |
Target: 5'- uGCgCGGGGcUCUCCGAggaCCGGGaCGGg -3' miRNA: 3'- -CGaGCCCU-AGAGGCUag-GGUCC-GCCa -5' |
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9005 | 3' | -59.4 | NC_002512.2 | + | 8167 | 0.71 | 0.590569 |
Target: 5'- cGCUCGGGgAUCUcggcguagcacCCGAggccgagcgUCgCCGGGCGGg -3' miRNA: 3'- -CGAGCCC-UAGA-----------GGCU---------AG-GGUCCGCCa -5' |
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9005 | 3' | -59.4 | NC_002512.2 | + | 157076 | 0.71 | 0.619516 |
Target: 5'- gGUcCGGGGUCgCCGGcgCCCAcGGCGGg -3' miRNA: 3'- -CGaGCCCUAGaGGCUa-GGGU-CCGCCa -5' |
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9005 | 3' | -59.4 | NC_002512.2 | + | 77223 | 0.7 | 0.638868 |
Target: 5'- aGCgacCGGGAggCgaaCGAgcgCCCGGGCGGUg -3' miRNA: 3'- -CGa--GCCCUa-Gag-GCUa--GGGUCCGCCA- -5' |
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9005 | 3' | -59.4 | NC_002512.2 | + | 133879 | 0.7 | 0.64854 |
Target: 5'- gGCUCGaGGAgcggCUCggccggCGGUCCCGGGCGc- -3' miRNA: 3'- -CGAGC-CCUa---GAG------GCUAGGGUCCGCca -5' |
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9005 | 3' | -59.4 | NC_002512.2 | + | 192259 | 0.7 | 0.6582 |
Target: 5'- cGUUCGGG-UCUCggaGAUCCCAcGGCauGGUg -3' miRNA: 3'- -CGAGCCCuAGAGg--CUAGGGU-CCG--CCA- -5' |
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9005 | 3' | -59.4 | NC_002512.2 | + | 198695 | 0.7 | 0.667841 |
Target: 5'- -gUCGGGGgguUCUUCGGacgucgaggUCaCCAGGCGGUg -3' miRNA: 3'- cgAGCCCU---AGAGGCU---------AG-GGUCCGCCA- -5' |
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9005 | 3' | -59.4 | NC_002512.2 | + | 198518 | 0.7 | 0.667841 |
Target: 5'- cGCUCGGGucgcCUUCGAUCuCCAGcucGUGGUc -3' miRNA: 3'- -CGAGCCCua--GAGGCUAG-GGUC---CGCCA- -5' |
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9005 | 3' | -59.4 | NC_002512.2 | + | 72502 | 0.7 | 0.667841 |
Target: 5'- aGC-CGGcGAUCucgUCCGGUCCCugcccGGCGGc -3' miRNA: 3'- -CGaGCC-CUAG---AGGCUAGGGu----CCGCCa -5' |
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9005 | 3' | -59.4 | NC_002512.2 | + | 99390 | 0.69 | 0.696582 |
Target: 5'- aGCgUCGGGGUC-CgGAcUCCCGgGGCGGc -3' miRNA: 3'- -CG-AGCCCUAGaGgCU-AGGGU-CCGCCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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