miRNA display CGI


Results 1 - 20 of 56 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9005 3' -59.4 NC_002512.2 + 6675 0.67 0.83667
Target:  5'- gGC-CGGGAcgcgCUCCGGgacgccgUCCCcgucGGGCGGc -3'
miRNA:   3'- -CGaGCCCUa---GAGGCU-------AGGG----UCCGCCa -5'
9005 3' -59.4 NC_002512.2 + 7729 0.68 0.75255
Target:  5'- gGCgUCGGGAUag-CGGUCCUcggGGGCGGa -3'
miRNA:   3'- -CG-AGCCCUAgagGCUAGGG---UCCGCCa -5'
9005 3' -59.4 NC_002512.2 + 8167 0.71 0.590569
Target:  5'- cGCUCGGGgAUCUcggcguagcacCCGAggccgagcgUCgCCGGGCGGg -3'
miRNA:   3'- -CGAGCCC-UAGA-----------GGCU---------AG-GGUCCGCCa -5'
9005 3' -59.4 NC_002512.2 + 8675 0.66 0.852643
Target:  5'- cGUUCGGGAccucUCUCCGuacguacucggGUCCCguccacuccgAGGuCGGUc -3'
miRNA:   3'- -CGAGCCCU----AGAGGC-----------UAGGG----------UCC-GCCA- -5'
9005 3' -59.4 NC_002512.2 + 12413 0.66 0.867123
Target:  5'- cGC-CGGGAUCgcgagcucgCCGcgCgCgAGGCGGg -3'
miRNA:   3'- -CGaGCCCUAGa--------GGCuaG-GgUCCGCCa -5'
9005 3' -59.4 NC_002512.2 + 15153 0.73 0.496636
Target:  5'- cGCgcaGGGGUUUuuGAagCCCGGGCGGg -3'
miRNA:   3'- -CGag-CCCUAGAggCUa-GGGUCCGCCa -5'
9005 3' -59.4 NC_002512.2 + 15290 0.66 0.880181
Target:  5'- -gUCGGGcugcaggaagagcGUCUCgucgCCCAGGCGGg -3'
miRNA:   3'- cgAGCCC-------------UAGAGgcuaGGGUCCGCCa -5'
9005 3' -59.4 NC_002512.2 + 24303 0.67 0.81342
Target:  5'- aGCggCGGGGcgaaCUgCGGUCCCccGGCGGUc -3'
miRNA:   3'- -CGa-GCCCUa---GAgGCUAGGGu-CCGCCA- -5'
9005 3' -59.4 NC_002512.2 + 27627 0.66 0.85925
Target:  5'- aCUUGGGAUCUCUucgaaaaGAUCCacgaaGCGGUa -3'
miRNA:   3'- cGAGCCCUAGAGG-------CUAGGguc--CGCCA- -5'
9005 3' -59.4 NC_002512.2 + 37625 0.66 0.852643
Target:  5'- uGCcgUGGGAUCUCCGAgaCCCGaacguaGCGGc -3'
miRNA:   3'- -CGa-GCCCUAGAGGCUa-GGGUc-----CGCCa -5'
9005 3' -59.4 NC_002512.2 + 46485 0.69 0.723953
Target:  5'- cGCUCuuGGGcAUCU-CGAUCCCggugucgAGGCGGa -3'
miRNA:   3'- -CGAG--CCC-UAGAgGCUAGGG-------UCCGCCa -5'
9005 3' -59.4 NC_002512.2 + 64422 0.72 0.533551
Target:  5'- aCUCGGGAUCuUCCGAUCgaUCAGaaaGCGGg -3'
miRNA:   3'- cGAGCCCUAG-AGGCUAG--GGUC---CGCCa -5'
9005 3' -59.4 NC_002512.2 + 69126 0.67 0.821586
Target:  5'- cGCUcCGGGAcCUCCGugCCCGGGgcCGGc -3'
miRNA:   3'- -CGA-GCCCUaGAGGCuaGGGUCC--GCCa -5'
9005 3' -59.4 NC_002512.2 + 72502 0.7 0.667841
Target:  5'- aGC-CGGcGAUCucgUCCGGUCCCugcccGGCGGc -3'
miRNA:   3'- -CGaGCC-CUAG---AGGCUAGGGu----CCGCCa -5'
9005 3' -59.4 NC_002512.2 + 77223 0.7 0.638868
Target:  5'- aGCgacCGGGAggCgaaCGAgcgCCCGGGCGGUg -3'
miRNA:   3'- -CGa--GCCCUa-Gag-GCUa--GGGUCCGCCA- -5'
9005 3' -59.4 NC_002512.2 + 80659 0.68 0.796655
Target:  5'- cGC-CGGG-UCcgUCGGUCCCGcGGCGGc -3'
miRNA:   3'- -CGaGCCCuAGa-GGCUAGGGU-CCGCCa -5'
9005 3' -59.4 NC_002512.2 + 80855 0.66 0.859975
Target:  5'- cCUCGGGAcgCggggCuCGGUgUCGGGCGGUc -3'
miRNA:   3'- cGAGCCCUa-Ga---G-GCUAgGGUCCGCCA- -5'
9005 3' -59.4 NC_002512.2 + 82403 0.67 0.805108
Target:  5'- cGCgcgCGGGGgagCCGGuggUCCCGcGGCGGa -3'
miRNA:   3'- -CGa--GCCCUagaGGCU---AGGGU-CCGCCa -5'
9005 3' -59.4 NC_002512.2 + 84164 0.67 0.802587
Target:  5'- cGCgCGGGAggUC-CCGGUCcagguucggcgggaCCAGGCGGc -3'
miRNA:   3'- -CGaGCCCU--AGaGGCUAG--------------GGUCCGCCa -5'
9005 3' -59.4 NC_002512.2 + 90054 0.68 0.796655
Target:  5'- cGCUCGGGGUCgaccaugaCGuUCgCCggGGGCGGg -3'
miRNA:   3'- -CGAGCCCUAGag------GCuAG-GG--UCCGCCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.