miRNA display CGI


Results 1 - 20 of 56 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9005 3' -59.4 NC_002512.2 + 225838 0.67 0.829597
Target:  5'- cGCggGGGAUCgagCCGcuccuGUCCCGGGUGu- -3'
miRNA:   3'- -CGagCCCUAGa--GGC-----UAGGGUCCGCca -5'
9005 3' -59.4 NC_002512.2 + 224379 0.66 0.852643
Target:  5'- gGUcCGGGAcCUCgCGAcCCCGGcGCGGa -3'
miRNA:   3'- -CGaGCCCUaGAG-GCUaGGGUC-CGCCa -5'
9005 3' -59.4 NC_002512.2 + 219837 0.69 0.706075
Target:  5'- cGgUCGGGGggUCCGG-CCCggGGGCGGa -3'
miRNA:   3'- -CgAGCCCUagAGGCUaGGG--UCCGCCa -5'
9005 3' -59.4 NC_002512.2 + 218293 0.76 0.326381
Target:  5'- cCUCGGGGUCcCCGGcCCUGGGCGGc -3'
miRNA:   3'- cGAGCCCUAGaGGCUaGGGUCCGCCa -5'
9005 3' -59.4 NC_002512.2 + 207829 0.69 0.73419
Target:  5'- aCUCGGcGUCUcCCGAUCCC-GGCGc- -3'
miRNA:   3'- cGAGCCcUAGA-GGCUAGGGuCCGCca -5'
9005 3' -59.4 NC_002512.2 + 206129 0.66 0.867123
Target:  5'- gGCgcagCGGGGcgUCCGGUCgCCAGaCGGUc -3'
miRNA:   3'- -CGa---GCCCUagAGGCUAG-GGUCcGCCA- -5'
9005 3' -59.4 NC_002512.2 + 204800 0.68 0.796655
Target:  5'- cGCcCGGGAggUCCGcGUCCCGGG-GGc -3'
miRNA:   3'- -CGaGCCCUagAGGC-UAGGGUCCgCCa -5'
9005 3' -59.4 NC_002512.2 + 201747 0.69 0.743413
Target:  5'- gGCUgGGGcg--CCGAUCCCGGG-GGa -3'
miRNA:   3'- -CGAgCCCuagaGGCUAGGGUCCgCCa -5'
9005 3' -59.4 NC_002512.2 + 198695 0.7 0.667841
Target:  5'- -gUCGGGGgguUCUUCGGacgucgaggUCaCCAGGCGGUg -3'
miRNA:   3'- cgAGCCCU---AGAGGCU---------AG-GGUCCGCCA- -5'
9005 3' -59.4 NC_002512.2 + 198518 0.7 0.667841
Target:  5'- cGCUCGGGucgcCUUCGAUCuCCAGcucGUGGUc -3'
miRNA:   3'- -CGAGCCCua--GAGGCUAG-GGUC---CGCCA- -5'
9005 3' -59.4 NC_002512.2 + 194633 0.67 0.819152
Target:  5'- cGCggGGGAccugcccguccucuUCUCCGAUC--GGGCGGUc -3'
miRNA:   3'- -CGagCCCU--------------AGAGGCUAGggUCCGCCA- -5'
9005 3' -59.4 NC_002512.2 + 192259 0.7 0.6582
Target:  5'- cGUUCGGG-UCUCggaGAUCCCAcGGCauGGUg -3'
miRNA:   3'- -CGAGCCCuAGAGg--CUAGGGU-CCG--CCA- -5'
9005 3' -59.4 NC_002512.2 + 183222 0.67 0.820776
Target:  5'- --aCGGGAUCgaccCCGAggaccccUUCCAGGUGGc -3'
miRNA:   3'- cgaGCCCUAGa---GGCU-------AGGGUCCGCCa -5'
9005 3' -59.4 NC_002512.2 + 182009 0.75 0.410022
Target:  5'- cCUCGGGGUCa--GG-CCCAGGCGGUa -3'
miRNA:   3'- cGAGCCCUAGaggCUaGGGUCCGCCA- -5'
9005 3' -59.4 NC_002512.2 + 180031 1.09 0.002275
Target:  5'- cGCUCGGGAUCUCCGAUCCCAGGCGGUg -3'
miRNA:   3'- -CGAGCCCUAGAGGCUAGGGUCCGCCA- -5'
9005 3' -59.4 NC_002512.2 + 173326 0.72 0.524224
Target:  5'- cGCcugCGGGGUCUUCGGUCCC-GGCa-- -3'
miRNA:   3'- -CGa--GCCCUAGAGGCUAGGGuCCGcca -5'
9005 3' -59.4 NC_002512.2 + 159360 0.66 0.867828
Target:  5'- gGCgUCGGGGUCggggcgucccauucgCgGGUCCCgcggcgucgGGGCGGa -3'
miRNA:   3'- -CG-AGCCCUAGa--------------GgCUAGGG---------UCCGCCa -5'
9005 3' -59.4 NC_002512.2 + 157076 0.71 0.619516
Target:  5'- gGUcCGGGGUCgCCGGcgCCCAcGGCGGg -3'
miRNA:   3'- -CGaGCCCUAGaGGCUa-GGGU-CCGCCa -5'
9005 3' -59.4 NC_002512.2 + 152839 0.71 0.580966
Target:  5'- -aUCGGGc-CUCgCGGUcCCCAGGCGGa -3'
miRNA:   3'- cgAGCCCuaGAG-GCUA-GGGUCCGCCa -5'
9005 3' -59.4 NC_002512.2 + 142237 0.73 0.505762
Target:  5'- cGCggaacgCGGGAUCUCCGAUCUgGGaucCGGUc -3'
miRNA:   3'- -CGa-----GCCCUAGAGGCUAGGgUCc--GCCA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.