miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9005 3' -59.4 NC_002512.2 + 90500 0.66 0.852643
Target:  5'- --aCGGGAUCggggCCGAggCCGgcGGCGGa -3'
miRNA:   3'- cgaGCCCUAGa---GGCUagGGU--CCGCCa -5'
9005 3' -59.4 NC_002512.2 + 96301 0.66 0.867123
Target:  5'- gGC-CGGcccgCUCgGGUCCCcGGCGGUc -3'
miRNA:   3'- -CGaGCCcua-GAGgCUAGGGuCCGCCA- -5'
9005 3' -59.4 NC_002512.2 + 99390 0.69 0.696582
Target:  5'- aGCgUCGGGGUC-CgGAcUCCCGgGGCGGc -3'
miRNA:   3'- -CG-AGCCCUAGaGgCU-AGGGU-CCGCCa -5'
9005 3' -59.4 NC_002512.2 + 101849 0.68 0.796655
Target:  5'- -gUCGGGGccgugcagcUCUUCGAcgCCgGGGCGGg -3'
miRNA:   3'- cgAGCCCU---------AGAGGCUa-GGgUCCGCCa -5'
9005 3' -59.4 NC_002512.2 + 103496 0.68 0.761591
Target:  5'- cGCcCGGGGcC-CCGGgcgcucUCCCGGGCGGc -3'
miRNA:   3'- -CGaGCCCUaGaGGCU------AGGGUCCGCCa -5'
9005 3' -59.4 NC_002512.2 + 107006 0.67 0.845132
Target:  5'- gGC-CGGGGUCggCCGAgagCCGGGCGc- -3'
miRNA:   3'- -CGaGCCCUAGa-GGCUag-GGUCCGCca -5'
9005 3' -59.4 NC_002512.2 + 108445 0.66 0.867123
Target:  5'- gGC-CGGGGggUCCcucCCCGGGCGGc -3'
miRNA:   3'- -CGaGCCCUagAGGcuaGGGUCCGCCa -5'
9005 3' -59.4 NC_002512.2 + 116459 0.68 0.796655
Target:  5'- aGCUCGGGGacggggCggUGAUCCC-GGCGGc -3'
miRNA:   3'- -CGAGCCCUa-----GagGCUAGGGuCCGCCa -5'
9005 3' -59.4 NC_002512.2 + 122175 0.66 0.874083
Target:  5'- --aCGG--UCUCgGAUCCCAacacGGCGGUg -3'
miRNA:   3'- cgaGCCcuAGAGgCUAGGGU----CCGCCA- -5'
9005 3' -59.4 NC_002512.2 + 126968 0.67 0.845132
Target:  5'- cGCUCccaguaGGGGUCcgcggUCCucUCCCAGcGCGGg -3'
miRNA:   3'- -CGAG------CCCUAG-----AGGcuAGGGUC-CGCCa -5'
9005 3' -59.4 NC_002512.2 + 127073 0.69 0.706075
Target:  5'- -aUCGGGuAUC-CCGuUCCCGGaGCGGa -3'
miRNA:   3'- cgAGCCC-UAGaGGCuAGGGUC-CGCCa -5'
9005 3' -59.4 NC_002512.2 + 128794 0.74 0.426601
Target:  5'- cCUCuGGGUCUCCGGcguggUCCgCGGGCGGg -3'
miRNA:   3'- cGAGcCCUAGAGGCU-----AGG-GUCCGCCa -5'
9005 3' -59.4 NC_002512.2 + 130661 0.71 0.580966
Target:  5'- uGCgCGGGGcUCUCCGAggaCCGGGaCGGg -3'
miRNA:   3'- -CGaGCCCU-AGAGGCUag-GGUCC-GCCa -5'
9005 3' -59.4 NC_002512.2 + 131680 0.67 0.837448
Target:  5'- uGCUCGGGAaggUCcCCGAgaacgccaUCCCucGGaCGGUc -3'
miRNA:   3'- -CGAGCCCU---AGaGGCU--------AGGGu-CC-GCCA- -5'
9005 3' -59.4 NC_002512.2 + 133879 0.7 0.64854
Target:  5'- gGCUCGaGGAgcggCUCggccggCGGUCCCGGGCGc- -3'
miRNA:   3'- -CGAGC-CCUa---GAG------GCUAGGGUCCGCca -5'
9005 3' -59.4 NC_002512.2 + 134726 0.73 0.478613
Target:  5'- gGC-CGGGGgaaggCUCCGGUCCUcgacccgccgGGGCGGa -3'
miRNA:   3'- -CGaGCCCUa----GAGGCUAGGG----------UCCGCCa -5'
9005 3' -59.4 NC_002512.2 + 142237 0.73 0.505762
Target:  5'- cGCggaacgCGGGAUCUCCGAUCUgGGaucCGGUc -3'
miRNA:   3'- -CGa-----GCCCUAGAGGCUAGGgUCc--GCCA- -5'
9005 3' -59.4 NC_002512.2 + 152839 0.71 0.580966
Target:  5'- -aUCGGGc-CUCgCGGUcCCCAGGCGGa -3'
miRNA:   3'- cgAGCCCuaGAG-GCUA-GGGUCCGCCa -5'
9005 3' -59.4 NC_002512.2 + 157076 0.71 0.619516
Target:  5'- gGUcCGGGGUCgCCGGcgCCCAcGGCGGg -3'
miRNA:   3'- -CGaGCCCUAGaGGCUa-GGGU-CCGCCa -5'
9005 3' -59.4 NC_002512.2 + 159360 0.66 0.867828
Target:  5'- gGCgUCGGGGUCggggcgucccauucgCgGGUCCCgcggcgucgGGGCGGa -3'
miRNA:   3'- -CG-AGCCCUAGa--------------GgCUAGGG---------UCCGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.