miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9005 3' -59.4 NC_002512.2 + 130661 0.71 0.580966
Target:  5'- uGCgCGGGGcUCUCCGAggaCCGGGaCGGg -3'
miRNA:   3'- -CGaGCCCU-AGAGGCUag-GGUCC-GCCa -5'
9005 3' -59.4 NC_002512.2 + 8167 0.71 0.590569
Target:  5'- cGCUCGGGgAUCUcggcguagcacCCGAggccgagcgUCgCCGGGCGGg -3'
miRNA:   3'- -CGAGCCC-UAGA-----------GGCU---------AG-GGUCCGCCa -5'
9005 3' -59.4 NC_002512.2 + 133879 0.7 0.64854
Target:  5'- gGCUCGaGGAgcggCUCggccggCGGUCCCGGGCGc- -3'
miRNA:   3'- -CGAGC-CCUa---GAG------GCUAGGGUCCGCca -5'
9005 3' -59.4 NC_002512.2 + 192259 0.7 0.6582
Target:  5'- cGUUCGGG-UCUCggaGAUCCCAcGGCauGGUg -3'
miRNA:   3'- -CGAGCCCuAGAGg--CUAGGGU-CCG--CCA- -5'
9005 3' -59.4 NC_002512.2 + 72502 0.7 0.667841
Target:  5'- aGC-CGGcGAUCucgUCCGGUCCCugcccGGCGGc -3'
miRNA:   3'- -CGaGCC-CUAG---AGGCUAGGGu----CCGCCa -5'
9005 3' -59.4 NC_002512.2 + 99390 0.69 0.696582
Target:  5'- aGCgUCGGGGUC-CgGAcUCCCGgGGCGGc -3'
miRNA:   3'- -CG-AGCCCUAGaGgCU-AGGGU-CCGCCa -5'
9005 3' -59.4 NC_002512.2 + 46485 0.69 0.723953
Target:  5'- cGCUCuuGGGcAUCU-CGAUCCCggugucgAGGCGGa -3'
miRNA:   3'- -CGAG--CCC-UAGAgGCUAGGG-------UCCGCCa -5'
9005 3' -59.4 NC_002512.2 + 37625 0.66 0.852643
Target:  5'- uGCcgUGGGAUCUCCGAgaCCCGaacguaGCGGc -3'
miRNA:   3'- -CGa-GCCCUAGAGGCUa-GGGUc-----CGCCa -5'
9005 3' -59.4 NC_002512.2 + 126968 0.67 0.845132
Target:  5'- cGCUCccaguaGGGGUCcgcggUCCucUCCCAGcGCGGg -3'
miRNA:   3'- -CGAG------CCCUAG-----AGGcuAGGGUC-CGCCa -5'
9005 3' -59.4 NC_002512.2 + 107006 0.67 0.845132
Target:  5'- gGC-CGGGGUCggCCGAgagCCGGGCGc- -3'
miRNA:   3'- -CGaGCCCUAGa-GGCUag-GGUCCGCca -5'
9005 3' -59.4 NC_002512.2 + 225838 0.67 0.829597
Target:  5'- cGCggGGGAUCgagCCGcuccuGUCCCGGGUGu- -3'
miRNA:   3'- -CGagCCCUAGa--GGC-----UAGGGUCCGCca -5'
9005 3' -59.4 NC_002512.2 + 183222 0.67 0.820776
Target:  5'- --aCGGGAUCgaccCCGAggaccccUUCCAGGUGGc -3'
miRNA:   3'- cgaGCCCUAGa---GGCU-------AGGGUCCGCCa -5'
9005 3' -59.4 NC_002512.2 + 90500 0.66 0.852643
Target:  5'- --aCGGGAUCggggCCGAggCCGgcGGCGGa -3'
miRNA:   3'- cgaGCCCUAGa---GGCUagGGU--CCGCCa -5'
9005 3' -59.4 NC_002512.2 + 224379 0.66 0.852643
Target:  5'- gGUcCGGGAcCUCgCGAcCCCGGcGCGGa -3'
miRNA:   3'- -CGaGCCCUaGAG-GCUaGGGUC-CGCCa -5'
9005 3' -59.4 NC_002512.2 + 27627 0.66 0.85925
Target:  5'- aCUUGGGAUCUCUucgaaaaGAUCCacgaaGCGGUa -3'
miRNA:   3'- cGAGCCCUAGAGG-------CUAGGguc--CGCCA- -5'
9005 3' -59.4 NC_002512.2 + 108445 0.66 0.867123
Target:  5'- gGC-CGGGGggUCCcucCCCGGGCGGc -3'
miRNA:   3'- -CGaGCCCUagAGGcuaGGGUCCGCCa -5'
9005 3' -59.4 NC_002512.2 + 206129 0.66 0.867123
Target:  5'- gGCgcagCGGGGcgUCCGGUCgCCAGaCGGUc -3'
miRNA:   3'- -CGa---GCCCUagAGGCUAG-GGUCcGCCA- -5'
9005 3' -59.4 NC_002512.2 + 96301 0.66 0.867123
Target:  5'- gGC-CGGcccgCUCgGGUCCCcGGCGGUc -3'
miRNA:   3'- -CGaGCCcua-GAGgCUAGGGuCCGCCA- -5'
9005 3' -59.4 NC_002512.2 + 159360 0.66 0.867828
Target:  5'- gGCgUCGGGGUCggggcgucccauucgCgGGUCCCgcggcgucgGGGCGGa -3'
miRNA:   3'- -CG-AGCCCUAGa--------------GgCUAGGG---------UCCGCCa -5'
9005 3' -59.4 NC_002512.2 + 180031 1.09 0.002275
Target:  5'- cGCUCGGGAUCUCCGAUCCCAGGCGGUg -3'
miRNA:   3'- -CGAGCCCUAGAGGCUAGGGUCCGCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.