miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9009 3' -54.9 NC_002512.2 + 174026 1.06 0.007917
Target:  5'- gUACAUGUCCGCCUCGAAGUCCUCCAGc -3'
miRNA:   3'- -AUGUACAGGCGGAGCUUCAGGAGGUC- -5'
9009 3' -54.9 NC_002512.2 + 136986 0.78 0.411777
Target:  5'- gACGcUGUUCGCCUCGAccAG-CCUCCAGg -3'
miRNA:   3'- aUGU-ACAGGCGGAGCU--UCaGGAGGUC- -5'
9009 3' -54.9 NC_002512.2 + 96587 0.77 0.455965
Target:  5'- ------cCCGCCUCGggGUCCUCUGGg -3'
miRNA:   3'- auguacaGGCGGAGCuuCAGGAGGUC- -5'
9009 3' -54.9 NC_002512.2 + 218246 0.74 0.621246
Target:  5'- aUAUAUGUCCGggUCGgcGUCCUCCAc -3'
miRNA:   3'- -AUGUACAGGCggAGCuuCAGGAGGUc -5'
9009 3' -54.9 NC_002512.2 + 44454 0.74 0.65154
Target:  5'- gACAgGaCgGCCUCGAAGaCCUCCAGg -3'
miRNA:   3'- aUGUaCaGgCGGAGCUUCaGGAGGUC- -5'
9009 3' -54.9 NC_002512.2 + 98940 0.73 0.681697
Target:  5'- gGCGgucGUCCGCCUCGAgcucAGUCgguguccggggaCUCCAGa -3'
miRNA:   3'- aUGUa--CAGGCGGAGCU----UCAG------------GAGGUC- -5'
9009 3' -54.9 NC_002512.2 + 154336 0.72 0.740702
Target:  5'- ----cGUCCGCgUCGucGUCCUCCGc -3'
miRNA:   3'- auguaCAGGCGgAGCuuCAGGAGGUc -5'
9009 3' -54.9 NC_002512.2 + 112354 0.72 0.769078
Target:  5'- aGCGUGUCCGUgUCGAAgguGUCCgUCCu- -3'
miRNA:   3'- aUGUACAGGCGgAGCUU---CAGG-AGGuc -5'
9009 3' -54.9 NC_002512.2 + 11096 0.71 0.778311
Target:  5'- gGCGgugucGUCCGCCUCGGccucGUCC-CCGGa -3'
miRNA:   3'- aUGUa----CAGGCGGAGCUu---CAGGaGGUC- -5'
9009 3' -54.9 NC_002512.2 + 94865 0.71 0.778311
Target:  5'- gAUccGUCCGCCggccCGAA-UCCUCCAGg -3'
miRNA:   3'- aUGuaCAGGCGGa---GCUUcAGGAGGUC- -5'
9009 3' -54.9 NC_002512.2 + 128556 0.71 0.805209
Target:  5'- cACAUGUCCaCCuUCGAcGgCCUCCGGg -3'
miRNA:   3'- aUGUACAGGcGG-AGCUuCaGGAGGUC- -5'
9009 3' -54.9 NC_002512.2 + 218747 0.71 0.813881
Target:  5'- cGCGUGUCCGgcCCUCGGAcUCCUCg-- -3'
miRNA:   3'- aUGUACAGGC--GGAGCUUcAGGAGguc -5'
9009 3' -54.9 NC_002512.2 + 140537 0.71 0.822392
Target:  5'- gACGg--CCGCCUCGAcgccguucuGGUCCUCUAc -3'
miRNA:   3'- aUGUacaGGCGGAGCU---------UCAGGAGGUc -5'
9009 3' -54.9 NC_002512.2 + 100430 0.71 0.822392
Target:  5'- ----cGUCCgaggGCCUCGcAGGUCUUCCGGg -3'
miRNA:   3'- auguaCAGG----CGGAGC-UUCAGGAGGUC- -5'
9009 3' -54.9 NC_002512.2 + 227553 0.7 0.830735
Target:  5'- gGCggGUCCGCgacCGAGG-CCUCCGGa -3'
miRNA:   3'- aUGuaCAGGCGga-GCUUCaGGAGGUC- -5'
9009 3' -54.9 NC_002512.2 + 157346 0.7 0.846885
Target:  5'- -cCGUGuUCCGCCUggccgcCGAGGUCCgggccgCCGGg -3'
miRNA:   3'- auGUAC-AGGCGGA------GCUUCAGGa-----GGUC- -5'
9009 3' -54.9 NC_002512.2 + 40134 0.7 0.862276
Target:  5'- ---uUGUCCcccGCCUCGAAGaCCUCCu- -3'
miRNA:   3'- auguACAGG---CGGAGCUUCaGGAGGuc -5'
9009 3' -54.9 NC_002512.2 + 73809 0.69 0.869671
Target:  5'- gUugGUGU-CGCCagGggGUCCUCCuGa -3'
miRNA:   3'- -AugUACAgGCGGagCuuCAGGAGGuC- -5'
9009 3' -54.9 NC_002512.2 + 82190 0.69 0.876859
Target:  5'- aGCccGUCCGCCgUCGGGccggcGUCCUcCCGGg -3'
miRNA:   3'- aUGuaCAGGCGG-AGCUU-----CAGGA-GGUC- -5'
9009 3' -54.9 NC_002512.2 + 91064 0.69 0.876859
Target:  5'- ----cGUCCGCCUgGAGGUCgCaCCGGg -3'
miRNA:   3'- auguaCAGGCGGAgCUUCAG-GaGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.