miRNA display CGI


Results 1 - 20 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9009 3' -54.9 NC_002512.2 + 5798 0.69 0.890591
Target:  5'- gACAcgGUCCcCCU-GAGGUCCUCCGu -3'
miRNA:   3'- aUGUa-CAGGcGGAgCUUCAGGAGGUc -5'
9009 3' -54.9 NC_002512.2 + 11096 0.71 0.778311
Target:  5'- gGCGgugucGUCCGCCUCGGccucGUCC-CCGGa -3'
miRNA:   3'- aUGUa----CAGGCGGAGCUu---CAGGaGGUC- -5'
9009 3' -54.9 NC_002512.2 + 17273 0.67 0.949858
Target:  5'- ----cGUCCGCgucCUCGucGUCCUCCu- -3'
miRNA:   3'- auguaCAGGCG---GAGCuuCAGGAGGuc -5'
9009 3' -54.9 NC_002512.2 + 40134 0.7 0.862276
Target:  5'- ---uUGUCCcccGCCUCGAAGaCCUCCu- -3'
miRNA:   3'- auguACAGG---CGGAGCUUCaGGAGGuc -5'
9009 3' -54.9 NC_002512.2 + 44454 0.74 0.65154
Target:  5'- gACAgGaCgGCCUCGAAGaCCUCCAGg -3'
miRNA:   3'- aUGUaCaGgCGGAGCUUCaGGAGGUC- -5'
9009 3' -54.9 NC_002512.2 + 67963 0.66 0.961221
Target:  5'- cGCcgGUUCGCCgUGgcGUCCgCCGGa -3'
miRNA:   3'- aUGuaCAGGCGGaGCuuCAGGaGGUC- -5'
9009 3' -54.9 NC_002512.2 + 73809 0.69 0.869671
Target:  5'- gUugGUGU-CGCCagGggGUCCUCCuGa -3'
miRNA:   3'- -AugUACAgGCGGagCuuCAGGAGGuC- -5'
9009 3' -54.9 NC_002512.2 + 78928 0.67 0.936469
Target:  5'- cGCGaGcCCGCCUCcGAGUCCgcggccgCCGGa -3'
miRNA:   3'- aUGUaCaGGCGGAGcUUCAGGa------GGUC- -5'
9009 3' -54.9 NC_002512.2 + 80069 0.67 0.953866
Target:  5'- cGCuc-UCCGCCUCGcuGUCCUCg-- -3'
miRNA:   3'- aUGuacAGGCGGAGCuuCAGGAGguc -5'
9009 3' -54.9 NC_002512.2 + 80139 0.68 0.931545
Target:  5'- cGCGgggucGUCCcCCUCGucGUCCUCCu- -3'
miRNA:   3'- aUGUa----CAGGcGGAGCuuCAGGAGGuc -5'
9009 3' -54.9 NC_002512.2 + 82190 0.69 0.876859
Target:  5'- aGCccGUCCGCCgUCGGGccggcGUCCUcCCGGg -3'
miRNA:   3'- aUGuaCAGGCGG-AGCUU-----CAGGA-GGUC- -5'
9009 3' -54.9 NC_002512.2 + 84156 0.68 0.909522
Target:  5'- cGCGUGgCCGCgCggGAGGUCCcggUCCAGg -3'
miRNA:   3'- aUGUACaGGCG-GagCUUCAGG---AGGUC- -5'
9009 3' -54.9 NC_002512.2 + 90403 0.66 0.967721
Target:  5'- -cCGUGUCCGCgUgGgcGUCCgcggCCAu -3'
miRNA:   3'- auGUACAGGCGgAgCuuCAGGa---GGUc -5'
9009 3' -54.9 NC_002512.2 + 91064 0.69 0.876859
Target:  5'- ----cGUCCGCCUgGAGGUCgCaCCGGg -3'
miRNA:   3'- auguaCAGGCGGAgCUUCAG-GaGGUC- -5'
9009 3' -54.9 NC_002512.2 + 94865 0.71 0.778311
Target:  5'- gAUccGUCCGCCggccCGAA-UCCUCCAGg -3'
miRNA:   3'- aUGuaCAGGCGGa---GCUUcAGGAGGUC- -5'
9009 3' -54.9 NC_002512.2 + 96587 0.77 0.455965
Target:  5'- ------cCCGCCUCGggGUCCUCUGGg -3'
miRNA:   3'- auguacaGGCGGAGCuuCAGGAGGUC- -5'
9009 3' -54.9 NC_002512.2 + 98351 0.66 0.961221
Target:  5'- gGCGgccccUCCGCCUCGucucCCUCCGGc -3'
miRNA:   3'- aUGUac---AGGCGGAGCuucaGGAGGUC- -5'
9009 3' -54.9 NC_002512.2 + 98940 0.73 0.681697
Target:  5'- gGCGgucGUCCGCCUCGAgcucAGUCgguguccggggaCUCCAGa -3'
miRNA:   3'- aUGUa--CAGGCGGAGCU----UCAG------------GAGGUC- -5'
9009 3' -54.9 NC_002512.2 + 100021 0.66 0.967721
Target:  5'- cGCGUG-CgGCCUCaaGggGcUCCUCCGc -3'
miRNA:   3'- aUGUACaGgCGGAG--CuuC-AGGAGGUc -5'
9009 3' -54.9 NC_002512.2 + 100430 0.71 0.822392
Target:  5'- ----cGUCCgaggGCCUCGcAGGUCUUCCGGg -3'
miRNA:   3'- auguaCAGG----CGGAGC-UUCAGGAGGUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.