miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9009 3' -54.9 NC_002512.2 + 104971 0.66 0.965858
Target:  5'- cGCcggGUCCGCCUCGAGGUaggggagguagcCCGGg -3'
miRNA:   3'- aUGua-CAGGCGGAGCUUCAgga---------GGUC- -5'
9009 3' -54.9 NC_002512.2 + 105700 0.69 0.903438
Target:  5'- gUGCGUGccgaacgCCGCgCUCGggGUCCgcucCCAc -3'
miRNA:   3'- -AUGUACa------GGCG-GAGCuuCAGGa---GGUc -5'
9009 3' -54.9 NC_002512.2 + 106285 0.68 0.909522
Target:  5'- cUGCAgucuuUCCGCCgCGgcGUCCUCuCAGa -3'
miRNA:   3'- -AUGUac---AGGCGGaGCuuCAGGAG-GUC- -5'
9009 3' -54.9 NC_002512.2 + 106641 0.66 0.973408
Target:  5'- aGCGgcgCCGgCUCGGcgaguAGUCCUCCGa -3'
miRNA:   3'- aUGUacaGGCgGAGCU-----UCAGGAGGUc -5'
9009 3' -54.9 NC_002512.2 + 109589 0.67 0.957653
Target:  5'- cGgAUGUCCGCCcUGAAcauGUCCagCCGGa -3'
miRNA:   3'- aUgUACAGGCGGaGCUU---CAGGa-GGUC- -5'
9009 3' -54.9 NC_002512.2 + 110550 0.67 0.957653
Target:  5'- gGCGUuUCCGCCcccgcgCGGgaGGUCCUgCCGGg -3'
miRNA:   3'- aUGUAcAGGCGGa-----GCU--UCAGGA-GGUC- -5'
9009 3' -54.9 NC_002512.2 + 110796 0.66 0.964575
Target:  5'- cACcagGUCCGCCgCGAuGUUCUCCu- -3'
miRNA:   3'- aUGua-CAGGCGGaGCUuCAGGAGGuc -5'
9009 3' -54.9 NC_002512.2 + 112354 0.72 0.769078
Target:  5'- aGCGUGUCCGUgUCGAAgguGUCCgUCCu- -3'
miRNA:   3'- aUGUACAGGCGgAGCUU---CAGG-AGGuc -5'
9009 3' -54.9 NC_002512.2 + 113645 0.68 0.915376
Target:  5'- cUGCAgggUgGCCUCGuGGUUCUCCGGg -3'
miRNA:   3'- -AUGUacaGgCGGAGCuUCAGGAGGUC- -5'
9009 3' -54.9 NC_002512.2 + 114023 0.66 0.973408
Target:  5'- gGCggGcCCGCCUCGgcGaacgCCUCgAGg -3'
miRNA:   3'- aUGuaCaGGCGGAGCuuCa---GGAGgUC- -5'
9009 3' -54.9 NC_002512.2 + 128556 0.71 0.805209
Target:  5'- cACAUGUCCaCCuUCGAcGgCCUCCGGg -3'
miRNA:   3'- aUGUACAGGcGG-AGCUuCaGGAGGUC- -5'
9009 3' -54.9 NC_002512.2 + 131236 0.68 0.920998
Target:  5'- cGCAUGUCUGCCgaCGAAcuccCCUCCGu -3'
miRNA:   3'- aUGUACAGGCGGa-GCUUca--GGAGGUc -5'
9009 3' -54.9 NC_002512.2 + 132028 0.69 0.890591
Target:  5'- gGCggGUCCGUCUCGGucgucgCCUCCGc -3'
miRNA:   3'- aUGuaCAGGCGGAGCUuca---GGAGGUc -5'
9009 3' -54.9 NC_002512.2 + 136986 0.78 0.411777
Target:  5'- gACGcUGUUCGCCUCGAccAG-CCUCCAGg -3'
miRNA:   3'- aUGU-ACAGGCGGAGCU--UCaGGAGGUC- -5'
9009 3' -54.9 NC_002512.2 + 139272 0.69 0.897127
Target:  5'- cGCGcUGUCCGCCUUGucccGGUCCaCCGu -3'
miRNA:   3'- aUGU-ACAGGCGGAGCu---UCAGGaGGUc -5'
9009 3' -54.9 NC_002512.2 + 140537 0.71 0.822392
Target:  5'- gACGg--CCGCCUCGAcgccguucuGGUCCUCUAc -3'
miRNA:   3'- aUGUacaGGCGGAGCU---------UCAGGAGGUc -5'
9009 3' -54.9 NC_002512.2 + 154336 0.72 0.740702
Target:  5'- ----cGUCCGCgUCGucGUCCUCCGc -3'
miRNA:   3'- auguaCAGGCGgAGCuuCAGGAGGUc -5'
9009 3' -54.9 NC_002512.2 + 157346 0.7 0.846885
Target:  5'- -cCGUGuUCCGCCUggccgcCGAGGUCCgggccgCCGGg -3'
miRNA:   3'- auGUAC-AGGCGGA------GCUUCAGGa-----GGUC- -5'
9009 3' -54.9 NC_002512.2 + 172939 0.67 0.957653
Target:  5'- cACcuucgCCGCCUCGGuGGUgCUCCGGa -3'
miRNA:   3'- aUGuaca-GGCGGAGCU-UCAgGAGGUC- -5'
9009 3' -54.9 NC_002512.2 + 174026 1.06 0.007917
Target:  5'- gUACAUGUCCGCCUCGAAGUCCUCCAGc -3'
miRNA:   3'- -AUGUACAGGCGGAGCUUCAGGAGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.