Results 21 - 40 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9009 | 3' | -54.9 | NC_002512.2 | + | 131236 | 0.68 | 0.920998 |
Target: 5'- cGCAUGUCUGCCgaCGAAcuccCCUCCGu -3' miRNA: 3'- aUGUACAGGCGGa-GCUUca--GGAGGUc -5' |
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9009 | 3' | -54.9 | NC_002512.2 | + | 128556 | 0.71 | 0.805209 |
Target: 5'- cACAUGUCCaCCuUCGAcGgCCUCCGGg -3' miRNA: 3'- aUGUACAGGcGG-AGCUuCaGGAGGUC- -5' |
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9009 | 3' | -54.9 | NC_002512.2 | + | 114023 | 0.66 | 0.973408 |
Target: 5'- gGCggGcCCGCCUCGgcGaacgCCUCgAGg -3' miRNA: 3'- aUGuaCaGGCGGAGCuuCa---GGAGgUC- -5' |
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9009 | 3' | -54.9 | NC_002512.2 | + | 113645 | 0.68 | 0.915376 |
Target: 5'- cUGCAgggUgGCCUCGuGGUUCUCCGGg -3' miRNA: 3'- -AUGUacaGgCGGAGCuUCAGGAGGUC- -5' |
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9009 | 3' | -54.9 | NC_002512.2 | + | 112354 | 0.72 | 0.769078 |
Target: 5'- aGCGUGUCCGUgUCGAAgguGUCCgUCCu- -3' miRNA: 3'- aUGUACAGGCGgAGCUU---CAGG-AGGuc -5' |
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9009 | 3' | -54.9 | NC_002512.2 | + | 110796 | 0.66 | 0.964575 |
Target: 5'- cACcagGUCCGCCgCGAuGUUCUCCu- -3' miRNA: 3'- aUGua-CAGGCGGaGCUuCAGGAGGuc -5' |
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9009 | 3' | -54.9 | NC_002512.2 | + | 110550 | 0.67 | 0.957653 |
Target: 5'- gGCGUuUCCGCCcccgcgCGGgaGGUCCUgCCGGg -3' miRNA: 3'- aUGUAcAGGCGGa-----GCU--UCAGGA-GGUC- -5' |
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9009 | 3' | -54.9 | NC_002512.2 | + | 109589 | 0.67 | 0.957653 |
Target: 5'- cGgAUGUCCGCCcUGAAcauGUCCagCCGGa -3' miRNA: 3'- aUgUACAGGCGGaGCUU---CAGGa-GGUC- -5' |
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9009 | 3' | -54.9 | NC_002512.2 | + | 106641 | 0.66 | 0.973408 |
Target: 5'- aGCGgcgCCGgCUCGGcgaguAGUCCUCCGa -3' miRNA: 3'- aUGUacaGGCgGAGCU-----UCAGGAGGUc -5' |
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9009 | 3' | -54.9 | NC_002512.2 | + | 106285 | 0.68 | 0.909522 |
Target: 5'- cUGCAgucuuUCCGCCgCGgcGUCCUCuCAGa -3' miRNA: 3'- -AUGUac---AGGCGGaGCuuCAGGAG-GUC- -5' |
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9009 | 3' | -54.9 | NC_002512.2 | + | 105700 | 0.69 | 0.903438 |
Target: 5'- gUGCGUGccgaacgCCGCgCUCGggGUCCgcucCCAc -3' miRNA: 3'- -AUGUACa------GGCG-GAGCuuCAGGa---GGUc -5' |
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9009 | 3' | -54.9 | NC_002512.2 | + | 104971 | 0.66 | 0.965858 |
Target: 5'- cGCcggGUCCGCCUCGAGGUaggggagguagcCCGGg -3' miRNA: 3'- aUGua-CAGGCGGAGCUUCAgga---------GGUC- -5' |
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9009 | 3' | -54.9 | NC_002512.2 | + | 100430 | 0.71 | 0.822392 |
Target: 5'- ----cGUCCgaggGCCUCGcAGGUCUUCCGGg -3' miRNA: 3'- auguaCAGG----CGGAGC-UUCAGGAGGUC- -5' |
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9009 | 3' | -54.9 | NC_002512.2 | + | 100021 | 0.66 | 0.967721 |
Target: 5'- cGCGUG-CgGCCUCaaGggGcUCCUCCGc -3' miRNA: 3'- aUGUACaGgCGGAG--CuuC-AGGAGGUc -5' |
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9009 | 3' | -54.9 | NC_002512.2 | + | 98940 | 0.73 | 0.681697 |
Target: 5'- gGCGgucGUCCGCCUCGAgcucAGUCgguguccggggaCUCCAGa -3' miRNA: 3'- aUGUa--CAGGCGGAGCU----UCAG------------GAGGUC- -5' |
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9009 | 3' | -54.9 | NC_002512.2 | + | 98351 | 0.66 | 0.961221 |
Target: 5'- gGCGgccccUCCGCCUCGucucCCUCCGGc -3' miRNA: 3'- aUGUac---AGGCGGAGCuucaGGAGGUC- -5' |
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9009 | 3' | -54.9 | NC_002512.2 | + | 96587 | 0.77 | 0.455965 |
Target: 5'- ------cCCGCCUCGggGUCCUCUGGg -3' miRNA: 3'- auguacaGGCGGAGCuuCAGGAGGUC- -5' |
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9009 | 3' | -54.9 | NC_002512.2 | + | 94865 | 0.71 | 0.778311 |
Target: 5'- gAUccGUCCGCCggccCGAA-UCCUCCAGg -3' miRNA: 3'- aUGuaCAGGCGGa---GCUUcAGGAGGUC- -5' |
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9009 | 3' | -54.9 | NC_002512.2 | + | 91064 | 0.69 | 0.876859 |
Target: 5'- ----cGUCCGCCUgGAGGUCgCaCCGGg -3' miRNA: 3'- auguaCAGGCGGAgCUUCAG-GaGGUC- -5' |
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9009 | 3' | -54.9 | NC_002512.2 | + | 90403 | 0.66 | 0.967721 |
Target: 5'- -cCGUGUCCGCgUgGgcGUCCgcggCCAu -3' miRNA: 3'- auGUACAGGCGgAgCuuCAGGa---GGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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