miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9009 3' -54.9 NC_002512.2 + 11096 0.71 0.778311
Target:  5'- gGCGgugucGUCCGCCUCGGccucGUCC-CCGGa -3'
miRNA:   3'- aUGUa----CAGGCGGAGCUu---CAGGaGGUC- -5'
9009 3' -54.9 NC_002512.2 + 128556 0.71 0.805209
Target:  5'- cACAUGUCCaCCuUCGAcGgCCUCCGGg -3'
miRNA:   3'- aUGUACAGGcGG-AGCUuCaGGAGGUC- -5'
9009 3' -54.9 NC_002512.2 + 40134 0.7 0.862276
Target:  5'- ---uUGUCCcccGCCUCGAAGaCCUCCu- -3'
miRNA:   3'- auguACAGG---CGGAGCUUCaGGAGGuc -5'
9009 3' -54.9 NC_002512.2 + 82190 0.69 0.876859
Target:  5'- aGCccGUCCGCCgUCGGGccggcGUCCUcCCGGg -3'
miRNA:   3'- aUGuaCAGGCGG-AGCUU-----CAGGA-GGUC- -5'
9009 3' -54.9 NC_002512.2 + 84156 0.68 0.909522
Target:  5'- cGCGUGgCCGCgCggGAGGUCCcggUCCAGg -3'
miRNA:   3'- aUGUACaGGCG-GagCUUCAGG---AGGUC- -5'
9009 3' -54.9 NC_002512.2 + 105700 0.69 0.903438
Target:  5'- gUGCGUGccgaacgCCGCgCUCGggGUCCgcucCCAc -3'
miRNA:   3'- -AUGUACa------GGCG-GAGCuuCAGGa---GGUc -5'
9009 3' -54.9 NC_002512.2 + 132028 0.69 0.890591
Target:  5'- gGCggGUCCGUCUCGGucgucgCCUCCGc -3'
miRNA:   3'- aUGuaCAGGCGGAGCUuca---GGAGGUc -5'
9009 3' -54.9 NC_002512.2 + 5798 0.69 0.890591
Target:  5'- gACAcgGUCCcCCU-GAGGUCCUCCGu -3'
miRNA:   3'- aUGUa-CAGGcGGAgCUUCAGGAGGUc -5'
9009 3' -54.9 NC_002512.2 + 225868 0.69 0.883833
Target:  5'- gUACAUGaacacggcUCCGCCUCGGGaauacugcUCCUUCAGg -3'
miRNA:   3'- -AUGUAC--------AGGCGGAGCUUc-------AGGAGGUC- -5'
9009 3' -54.9 NC_002512.2 + 139272 0.69 0.897127
Target:  5'- cGCGcUGUCCGCCUUGucccGGUCCaCCGu -3'
miRNA:   3'- aUGU-ACAGGCGGAGCu---UCAGGaGGUc -5'
9009 3' -54.9 NC_002512.2 + 187263 0.69 0.897127
Target:  5'- gUugAUGgcggacgUCGCCUCGAAGUgCCcCCGGg -3'
miRNA:   3'- -AugUACa------GGCGGAGCUUCA-GGaGGUC- -5'
9009 3' -54.9 NC_002512.2 + 218272 0.69 0.903438
Target:  5'- -cCAUGuacucauucuccUCgGCCUCGggGUCC-CCGGc -3'
miRNA:   3'- auGUAC------------AGgCGGAGCuuCAGGaGGUC- -5'
9009 3' -54.9 NC_002512.2 + 214641 0.68 0.915376
Target:  5'- cGCGgg-CCGCCUCGcAGUCuCUCCu- -3'
miRNA:   3'- aUGUacaGGCGGAGCuUCAG-GAGGuc -5'
9009 3' -54.9 NC_002512.2 + 181126 0.68 0.928479
Target:  5'- gACAcGUCCGUCUccagggccaggaCGAacgacuccgcggccaGGUCCUCCAGc -3'
miRNA:   3'- aUGUaCAGGCGGA------------GCU---------------UCAGGAGGUC- -5'
9009 3' -54.9 NC_002512.2 + 218013 0.67 0.941162
Target:  5'- gGgAUGUCCaccaCCUCGuaggGGUCCUCCGc -3'
miRNA:   3'- aUgUACAGGc---GGAGCu---UCAGGAGGUc -5'
9009 3' -54.9 NC_002512.2 + 210940 0.67 0.949858
Target:  5'- aUGCAguUCCGCCccgaggccaaCGAGGUCgUCCGGg -3'
miRNA:   3'- -AUGUacAGGCGGa---------GCUUCAGgAGGUC- -5'
9009 3' -54.9 NC_002512.2 + 176732 0.67 0.953866
Target:  5'- gUugAUcUCCGCCgUC-AGGUCCUUCAGg -3'
miRNA:   3'- -AugUAcAGGCGG-AGcUUCAGGAGGUC- -5'
9009 3' -54.9 NC_002512.2 + 172939 0.67 0.957653
Target:  5'- cACcuucgCCGCCUCGGuGGUgCUCCGGa -3'
miRNA:   3'- aUGuaca-GGCGGAGCU-UCAgGAGGUC- -5'
9009 3' -54.9 NC_002512.2 + 110796 0.66 0.964575
Target:  5'- cACcagGUCCGCCgCGAuGUUCUCCu- -3'
miRNA:   3'- aUGua-CAGGCGGaGCUuCAGGAGGuc -5'
9009 3' -54.9 NC_002512.2 + 174026 1.06 0.007917
Target:  5'- gUACAUGUCCGCCUCGAAGUCCUCCAGc -3'
miRNA:   3'- -AUGUACAGGCGGAGCUUCAGGAGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.