Results 41 - 52 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9009 | 3' | -54.9 | NC_002512.2 | + | 91064 | 0.69 | 0.876859 |
Target: 5'- ----cGUCCGCCUgGAGGUCgCaCCGGg -3' miRNA: 3'- auguaCAGGCGGAgCUUCAG-GaGGUC- -5' |
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9009 | 3' | -54.9 | NC_002512.2 | + | 139272 | 0.69 | 0.897127 |
Target: 5'- cGCGcUGUCCGCCUUGucccGGUCCaCCGu -3' miRNA: 3'- aUGU-ACAGGCGGAGCu---UCAGGaGGUc -5' |
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9009 | 3' | -54.9 | NC_002512.2 | + | 187263 | 0.69 | 0.897127 |
Target: 5'- gUugAUGgcggacgUCGCCUCGAAGUgCCcCCGGg -3' miRNA: 3'- -AugUACa------GGCGGAGCUUCA-GGaGGUC- -5' |
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9009 | 3' | -54.9 | NC_002512.2 | + | 218272 | 0.69 | 0.903438 |
Target: 5'- -cCAUGuacucauucuccUCgGCCUCGggGUCC-CCGGc -3' miRNA: 3'- auGUAC------------AGgCGGAGCuuCAGGaGGUC- -5' |
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9009 | 3' | -54.9 | NC_002512.2 | + | 214641 | 0.68 | 0.915376 |
Target: 5'- cGCGgg-CCGCCUCGcAGUCuCUCCu- -3' miRNA: 3'- aUGUacaGGCGGAGCuUCAG-GAGGuc -5' |
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9009 | 3' | -54.9 | NC_002512.2 | + | 181126 | 0.68 | 0.928479 |
Target: 5'- gACAcGUCCGUCUccagggccaggaCGAacgacuccgcggccaGGUCCUCCAGc -3' miRNA: 3'- aUGUaCAGGCGGA------------GCU---------------UCAGGAGGUC- -5' |
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9009 | 3' | -54.9 | NC_002512.2 | + | 218013 | 0.67 | 0.941162 |
Target: 5'- gGgAUGUCCaccaCCUCGuaggGGUCCUCCGc -3' miRNA: 3'- aUgUACAGGc---GGAGCu---UCAGGAGGUc -5' |
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9009 | 3' | -54.9 | NC_002512.2 | + | 210940 | 0.67 | 0.949858 |
Target: 5'- aUGCAguUCCGCCccgaggccaaCGAGGUCgUCCGGg -3' miRNA: 3'- -AUGUacAGGCGGa---------GCUUCAGgAGGUC- -5' |
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9009 | 3' | -54.9 | NC_002512.2 | + | 176732 | 0.67 | 0.953866 |
Target: 5'- gUugAUcUCCGCCgUC-AGGUCCUUCAGg -3' miRNA: 3'- -AugUAcAGGCGG-AGcUUCAGGAGGUC- -5' |
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9009 | 3' | -54.9 | NC_002512.2 | + | 172939 | 0.67 | 0.957653 |
Target: 5'- cACcuucgCCGCCUCGGuGGUgCUCCGGa -3' miRNA: 3'- aUGuaca-GGCGGAGCU-UCAgGAGGUC- -5' |
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9009 | 3' | -54.9 | NC_002512.2 | + | 110796 | 0.66 | 0.964575 |
Target: 5'- cACcagGUCCGCCgCGAuGUUCUCCu- -3' miRNA: 3'- aUGua-CAGGCGGaGCUuCAGGAGGuc -5' |
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9009 | 3' | -54.9 | NC_002512.2 | + | 104971 | 0.66 | 0.965858 |
Target: 5'- cGCcggGUCCGCCUCGAGGUaggggagguagcCCGGg -3' miRNA: 3'- aUGua-CAGGCGGAGCUUCAgga---------GGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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