miRNA display CGI


Results 41 - 60 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9009 5' -58.6 NC_002512.2 + 110617 0.66 0.896351
Target:  5'- gUCCUGGgcggcgcagaccauGGGGUCgccgggauccaGCCGCCGCuCGa -3'
miRNA:   3'- -AGGACC--------------UCCUAGaag--------UGGCGGCGcGC- -5'
9009 5' -58.6 NC_002512.2 + 120711 0.71 0.61822
Target:  5'- aCCUGG-GGcUCUUCAucCCGgccCCGCGCGa -3'
miRNA:   3'- aGGACCuCCuAGAAGU--GGC---GGCGCGC- -5'
9009 5' -58.6 NC_002512.2 + 121048 0.66 0.900658
Target:  5'- cUCUGGGccGGGUaccCGCCGCCcgagGCGCGg -3'
miRNA:   3'- aGGACCU--CCUAgaaGUGGCGG----CGCGC- -5'
9009 5' -58.6 NC_002512.2 + 123201 0.67 0.837829
Target:  5'- aCgaGGAGGAgCUgcccgaggacgUCGCCGCCcaGUGCGg -3'
miRNA:   3'- aGgaCCUCCUaGA-----------AGUGGCGG--CGCGC- -5'
9009 5' -58.6 NC_002512.2 + 124997 0.67 0.85312
Target:  5'- cCCUGGAcccGGccccgucgcgccGUCggCGCCGCCcgcuGCGCGa -3'
miRNA:   3'- aGGACCU---CC------------UAGaaGUGGCGG----CGCGC- -5'
9009 5' -58.6 NC_002512.2 + 125084 0.68 0.805264
Target:  5'- cCCUGGAGuacaa-C-CCGCCGCGCGc -3'
miRNA:   3'- aGGACCUCcuagaaGuGGCGGCGCGC- -5'
9009 5' -58.6 NC_002512.2 + 126284 0.66 0.874681
Target:  5'- aCCgGGAGGccGUCgaCACCGCCcuCGUGg -3'
miRNA:   3'- aGGaCCUCC--UAGaaGUGGCGGc-GCGC- -5'
9009 5' -58.6 NC_002512.2 + 126321 0.67 0.829926
Target:  5'- cUCCUGGAcGA-CgagGCCGCCGCGUc -3'
miRNA:   3'- -AGGACCUcCUaGaagUGGCGGCGCGc -5'
9009 5' -58.6 NC_002512.2 + 127830 0.66 0.881481
Target:  5'- cUCCgGGAGGucGUCggcggCGuCCGCCGCGa- -3'
miRNA:   3'- -AGGaCCUCC--UAGaa---GU-GGCGGCGCgc -5'
9009 5' -58.6 NC_002512.2 + 128345 0.67 0.860496
Target:  5'- cUCgCUcGAGGGUUcggUCuCCGUCGCGCGg -3'
miRNA:   3'- -AG-GAcCUCCUAGa--AGuGGCGGCGCGC- -5'
9009 5' -58.6 NC_002512.2 + 128902 0.66 0.874681
Target:  5'- gCCUGGc-GAUCcgC-CCGCCGCGgGa -3'
miRNA:   3'- aGGACCucCUAGaaGuGGCGGCGCgC- -5'
9009 5' -58.6 NC_002512.2 + 129019 0.7 0.686269
Target:  5'- gCCgGGAGGAguUCga-ACCgGCCGUGCGg -3'
miRNA:   3'- aGGaCCUCCU--AGaagUGG-CGGCGCGC- -5'
9009 5' -58.6 NC_002512.2 + 132489 0.78 0.277331
Target:  5'- cCCaGGAGGAaCUgcgucauguugaUCACCGCCGUGCGg -3'
miRNA:   3'- aGGaCCUCCUaGA------------AGUGGCGGCGCGC- -5'
9009 5' -58.6 NC_002512.2 + 133404 0.69 0.733796
Target:  5'- aCCaUGGAGGG-CgagACgGCCGCGCGg -3'
miRNA:   3'- aGG-ACCUCCUaGaagUGgCGGCGCGC- -5'
9009 5' -58.6 NC_002512.2 + 133653 0.74 0.494518
Target:  5'- gUCC-GGGGcGGUCgcCGCCGCCGcCGCGg -3'
miRNA:   3'- -AGGaCCUC-CUAGaaGUGGCGGC-GCGC- -5'
9009 5' -58.6 NC_002512.2 + 134178 0.66 0.894473
Target:  5'- cCCUGGcGGcguUCUUCGgCGaCGUGCGg -3'
miRNA:   3'- aGGACCuCCu--AGAAGUgGCgGCGCGC- -5'
9009 5' -58.6 NC_002512.2 + 134291 0.68 0.793305
Target:  5'- gUCCcGGAGGAUCgucuucgaggacgUCGCCgggGCCgGCGCc -3'
miRNA:   3'- -AGGaCCUCCUAGa------------AGUGG---CGG-CGCGc -5'
9009 5' -58.6 NC_002512.2 + 135014 0.67 0.850872
Target:  5'- gUCCUGGAGGAUUcggGCCggcggacggaucucGCCGCGg- -3'
miRNA:   3'- -AGGACCUCCUAGaagUGG--------------CGGCGCgc -5'
9009 5' -58.6 NC_002512.2 + 135792 0.67 0.829926
Target:  5'- ---cGGAGGAgUCggaccggcCGCCGCCGuCGCGg -3'
miRNA:   3'- aggaCCUCCU-AGaa------GUGGCGGC-GCGC- -5'
9009 5' -58.6 NC_002512.2 + 137781 0.72 0.608482
Target:  5'- gUCUGGAGG-UCggCGCUcggcggGCCGCGCGu -3'
miRNA:   3'- aGGACCUCCuAGaaGUGG------CGGCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.