miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9009 5' -58.6 NC_002512.2 + 56252 0.69 0.770425
Target:  5'- cCCcGGAcccGGGg-UUCGCCGCCGCgGCGg -3'
miRNA:   3'- aGGaCCU---CCUagAAGUGGCGGCG-CGC- -5'
9009 5' -58.6 NC_002512.2 + 68931 0.67 0.860496
Target:  5'- gCCUcgGGGGGAUCcccccUCgugacccccccACCGCCGCaGCGa -3'
miRNA:   3'- aGGA--CCUCCUAGa----AG-----------UGGCGGCG-CGC- -5'
9009 5' -58.6 NC_002512.2 + 70774 0.67 0.859036
Target:  5'- cUUCUGGGGcaGAUCccgucguccucgUCGCCGuuGCGCa -3'
miRNA:   3'- -AGGACCUC--CUAGa-----------AGUGGCggCGCGc -5'
9009 5' -58.6 NC_002512.2 + 72030 0.66 0.888079
Target:  5'- cCCUGGAuGGGcagcUugCGCUGCGCGu -3'
miRNA:   3'- aGGACCU-CCUagaaGugGCGGCGCGC- -5'
9009 5' -58.6 NC_002512.2 + 73974 0.67 0.85312
Target:  5'- -gCUGGAGGAcgcgUCggCGCCGgacucguccCCGCGCc -3'
miRNA:   3'- agGACCUCCU----AGaaGUGGC---------GGCGCGc -5'
9009 5' -58.6 NC_002512.2 + 74615 0.67 0.860496
Target:  5'- aCC-GGAgcGGAgcgCgagACCGCCGCGCGa -3'
miRNA:   3'- aGGaCCU--CCUa--GaagUGGCGGCGCGC- -5'
9009 5' -58.6 NC_002512.2 + 84293 0.69 0.728179
Target:  5'- gCCUGGAGG-UgUUCAUcagguaguugcggcgCGUCGCGCGc -3'
miRNA:   3'- aGGACCUCCuAgAAGUG---------------GCGGCGCGC- -5'
9009 5' -58.6 NC_002512.2 + 84451 0.67 0.829926
Target:  5'- ---cGGAGGAUCUcguccagCACCGCgGCGg- -3'
miRNA:   3'- aggaCCUCCUAGAa------GUGGCGgCGCgc -5'
9009 5' -58.6 NC_002512.2 + 87419 0.67 0.860496
Target:  5'- aUCgUGGGGGAgaUCgUCAUCGUcagCGUGCGg -3'
miRNA:   3'- -AGgACCUCCU--AGaAGUGGCG---GCGCGC- -5'
9009 5' -58.6 NC_002512.2 + 91537 0.68 0.775777
Target:  5'- gUCCUGGAGGAggaccaccuggcgCUgaccaCGCCGCUcuCGCGg -3'
miRNA:   3'- -AGGACCUCCUa------------GAa----GUGGCGGc-GCGC- -5'
9009 5' -58.6 NC_002512.2 + 91909 0.66 0.900658
Target:  5'- cUCCUGGGGcGG-CggcgCGCCGUCG-GCGg -3'
miRNA:   3'- -AGGACCUC-CUaGaa--GUGGCGGCgCGC- -5'
9009 5' -58.6 NC_002512.2 + 92893 0.67 0.837829
Target:  5'- cUCCUGGAGGcugGUCgaggcgaaCAgCGUCGCGUa -3'
miRNA:   3'- -AGGACCUCC---UAGaa------GUgGCGGCGCGc -5'
9009 5' -58.6 NC_002512.2 + 98583 0.78 0.283608
Target:  5'- aUCC-GGAGGAUCUUC-CCGaccucCCGCGCGu -3'
miRNA:   3'- -AGGaCCUCCUAGAAGuGGC-----GGCGCGC- -5'
9009 5' -58.6 NC_002512.2 + 100822 0.68 0.805264
Target:  5'- aCCUGGAcgaGGAUgUUCAUCGgCGUGaCGu -3'
miRNA:   3'- aGGACCU---CCUAgAAGUGGCgGCGC-GC- -5'
9009 5' -58.6 NC_002512.2 + 106579 0.71 0.627968
Target:  5'- gUCCUGuccGAUCUUCuucacCCGCCGCGCc -3'
miRNA:   3'- -AGGACcucCUAGAAGu----GGCGGCGCGc -5'
9009 5' -58.6 NC_002512.2 + 107872 0.68 0.796749
Target:  5'- gCgUGGAGGccGUCgUCACCuugGCCGcCGCGa -3'
miRNA:   3'- aGgACCUCC--UAGaAGUGG---CGGC-GCGC- -5'
9009 5' -58.6 NC_002512.2 + 108018 0.69 0.743093
Target:  5'- ---cGGuGGGUCUUCACCGCCuucuucCGCa -3'
miRNA:   3'- aggaCCuCCUAGAAGUGGCGGc-----GCGc -5'
9009 5' -58.6 NC_002512.2 + 109549 0.67 0.867685
Target:  5'- cUUCUGGGugcaggaccGGAUCU---CCGCCGUGCa -3'
miRNA:   3'- -AGGACCU---------CCUAGAaguGGCGGCGCGc -5'
9009 5' -58.6 NC_002512.2 + 110236 0.67 0.867685
Target:  5'- gCCgcggGGAGGAgcaucggCUUauaaAgCGCCGCGCu -3'
miRNA:   3'- aGGa---CCUCCUa------GAAg---UgGCGGCGCGc -5'
9009 5' -58.6 NC_002512.2 + 110373 0.66 0.906633
Target:  5'- aCCUGGugguGGcgCUgaUCAUgGCCGUGUa -3'
miRNA:   3'- aGGACCu---CCuaGA--AGUGgCGGCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.