miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9009 5' -58.6 NC_002512.2 + 50570 0.7 0.714021
Target:  5'- -gCUGcAGGAUCUgcccgccUCGCCGCC-CGCGg -3'
miRNA:   3'- agGACcUCCUAGA-------AGUGGCGGcGCGC- -5'
9009 5' -58.6 NC_002512.2 + 84293 0.69 0.728179
Target:  5'- gCCUGGAGG-UgUUCAUcagguaguugcggcgCGUCGCGCGc -3'
miRNA:   3'- aGGACCUCCuAgAAGUG---------------GCGGCGCGC- -5'
9009 5' -58.6 NC_002512.2 + 133404 0.69 0.733796
Target:  5'- aCCaUGGAGGG-CgagACgGCCGCGCGg -3'
miRNA:   3'- aGG-ACCUCCUaGaagUGgCGGCGCGC- -5'
9009 5' -58.6 NC_002512.2 + 45546 0.69 0.743093
Target:  5'- aCUUGGGGuaccUCUUCuuGCCGUCGCGCa -3'
miRNA:   3'- aGGACCUCcu--AGAAG--UGGCGGCGCGc -5'
9009 5' -58.6 NC_002512.2 + 108018 0.69 0.743093
Target:  5'- ---cGGuGGGUCUUCACCGCCuucuucCGCa -3'
miRNA:   3'- aggaCCuCCUAGAAGUGGCGGc-----GCGc -5'
9009 5' -58.6 NC_002512.2 + 211885 0.69 0.752303
Target:  5'- cCCUGGAgcGGGUCaccUUCcgggGCUGCCGCGUc -3'
miRNA:   3'- aGGACCU--CCUAG---AAG----UGGCGGCGCGc -5'
9009 5' -58.6 NC_002512.2 + 193359 0.69 0.761416
Target:  5'- aCCgUGGAGGAggagUUCGUCGCCGCGgGc -3'
miRNA:   3'- aGG-ACCUCCUag--AAGUGGCGGCGCgC- -5'
9009 5' -58.6 NC_002512.2 + 185305 0.69 0.761416
Target:  5'- gUCCUGGAGGGgcgcgaggagCUgcccgucugcgUCGCCGCCcGgGUGg -3'
miRNA:   3'- -AGGACCUCCUa---------GA-----------AGUGGCGG-CgCGC- -5'
9009 5' -58.6 NC_002512.2 + 20712 0.69 0.761416
Target:  5'- gUCCacGAGGAUCUU-GCgCGCCGUGCc -3'
miRNA:   3'- -AGGacCUCCUAGAAgUG-GCGGCGCGc -5'
9009 5' -58.6 NC_002512.2 + 56252 0.69 0.770425
Target:  5'- cCCcGGAcccGGGg-UUCGCCGCCGCgGCGg -3'
miRNA:   3'- aGGaCCU---CCUagAAGUGGCGGCG-CGC- -5'
9009 5' -58.6 NC_002512.2 + 91537 0.68 0.775777
Target:  5'- gUCCUGGAGGAggaccaccuggcgCUgaccaCGCCGCUcuCGCGg -3'
miRNA:   3'- -AGGACCUCCUa------------GAa----GUGGCGGc-GCGC- -5'
9009 5' -58.6 NC_002512.2 + 8373 0.68 0.779322
Target:  5'- gCC--GAGGAUCcgCGgCGCCGCGCa -3'
miRNA:   3'- aGGacCUCCUAGaaGUgGCGGCGCGc -5'
9009 5' -58.6 NC_002512.2 + 134291 0.68 0.793305
Target:  5'- gUCCcGGAGGAUCgucuucgaggacgUCGCCgggGCCgGCGCc -3'
miRNA:   3'- -AGGaCCUCCUAGa------------AGUGG---CGG-CGCGc -5'
9009 5' -58.6 NC_002512.2 + 9941 0.68 0.796749
Target:  5'- aCCcGGGGGAUC--CACCcucccCCGCGCGu -3'
miRNA:   3'- aGGaCCUCCUAGaaGUGGc----GGCGCGC- -5'
9009 5' -58.6 NC_002512.2 + 107872 0.68 0.796749
Target:  5'- gCgUGGAGGccGUCgUCACCuugGCCGcCGCGa -3'
miRNA:   3'- aGgACCUCC--UAGaAGUGG---CGGC-GCGC- -5'
9009 5' -58.6 NC_002512.2 + 227661 0.68 0.805264
Target:  5'- gUCC-GGAGGAagagcggCggCGCCGCCG-GCGa -3'
miRNA:   3'- -AGGaCCUCCUa------GaaGUGGCGGCgCGC- -5'
9009 5' -58.6 NC_002512.2 + 125084 0.68 0.805264
Target:  5'- cCCUGGAGuacaa-C-CCGCCGCGCGc -3'
miRNA:   3'- aGGACCUCcuagaaGuGGCGGCGCGC- -5'
9009 5' -58.6 NC_002512.2 + 100822 0.68 0.805264
Target:  5'- aCCUGGAcgaGGAUgUUCAUCGgCGUGaCGu -3'
miRNA:   3'- aGGACCU---CCUAgAAGUGGCgGCGC-GC- -5'
9009 5' -58.6 NC_002512.2 + 175189 0.68 0.813637
Target:  5'- ---cGGGGGGUUcucccgcgcgUUCAUCGCCGCGUc -3'
miRNA:   3'- aggaCCUCCUAG----------AAGUGGCGGCGCGc -5'
9009 5' -58.6 NC_002512.2 + 35906 0.68 0.813637
Target:  5'- aCCUGGAGagcgcGGUCaggaGCCGCCG-GCGg -3'
miRNA:   3'- aGGACCUC-----CUAGaag-UGGCGGCgCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.