miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9009 5' -58.6 NC_002512.2 + 35803 0.66 0.873298
Target:  5'- uUCUUGGAGGAUCgcggacaguCUGCUGCaGCu -3'
miRNA:   3'- -AGGACCUCCUAGaagu-----GGCGGCG-CGc -5'
9009 5' -58.6 NC_002512.2 + 38921 0.67 0.867685
Target:  5'- gCCcGGAGGG-----GCCGCCGCgGCGg -3'
miRNA:   3'- aGGaCCUCCUagaagUGGCGGCG-CGC- -5'
9009 5' -58.6 NC_002512.2 + 109549 0.67 0.867685
Target:  5'- cUUCUGGGugcaggaccGGAUCU---CCGCCGUGCa -3'
miRNA:   3'- -AGGACCU---------CCUAGAaguGGCGGCGCGc -5'
9009 5' -58.6 NC_002512.2 + 110236 0.67 0.867685
Target:  5'- gCCgcggGGAGGAgcaucggCUUauaaAgCGCCGCGCu -3'
miRNA:   3'- aGGa---CCUCCUa------GAAg---UgGCGGCGCGc -5'
9009 5' -58.6 NC_002512.2 + 185652 0.67 0.861224
Target:  5'- cUCCUGGGGGAcgucgcggggauccUgaaguccuucggucuCUUCugCGCCucgcuGCGCGa -3'
miRNA:   3'- -AGGACCUCCU--------------A---------------GAAGugGCGG-----CGCGC- -5'
9009 5' -58.6 NC_002512.2 + 226234 0.67 0.860496
Target:  5'- gCC-GGAGcGAUCUUaucgcCACCGCgGcCGCGa -3'
miRNA:   3'- aGGaCCUC-CUAGAA-----GUGGCGgC-GCGC- -5'
9009 5' -58.6 NC_002512.2 + 190546 0.67 0.860496
Target:  5'- cUCCU-GAGGccaCgcgUACCGCCGCGUGc -3'
miRNA:   3'- -AGGAcCUCCua-Gaa-GUGGCGGCGCGC- -5'
9009 5' -58.6 NC_002512.2 + 87419 0.67 0.860496
Target:  5'- aUCgUGGGGGAgaUCgUCAUCGUcagCGUGCGg -3'
miRNA:   3'- -AGgACCUCCU--AGaAGUGGCG---GCGCGC- -5'
9009 5' -58.6 NC_002512.2 + 35151 0.67 0.860496
Target:  5'- cCCacggUGGA-GAUCggCACCaGCCGCGCc -3'
miRNA:   3'- aGG----ACCUcCUAGaaGUGG-CGGCGCGc -5'
9009 5' -58.6 NC_002512.2 + 128345 0.67 0.860496
Target:  5'- cUCgCUcGAGGGUUcggUCuCCGUCGCGCGg -3'
miRNA:   3'- -AG-GAcCUCCUAGa--AGuGGCGGCGCGC- -5'
9009 5' -58.6 NC_002512.2 + 74615 0.67 0.860496
Target:  5'- aCC-GGAgcGGAgcgCgagACCGCCGCGCGa -3'
miRNA:   3'- aGGaCCU--CCUa--GaagUGGCGGCGCGC- -5'
9009 5' -58.6 NC_002512.2 + 68931 0.67 0.860496
Target:  5'- gCCUcgGGGGGAUCcccccUCgugacccccccACCGCCGCaGCGa -3'
miRNA:   3'- aGGA--CCUCCUAGa----AG-----------UGGCGGCG-CGC- -5'
9009 5' -58.6 NC_002512.2 + 202126 0.67 0.860496
Target:  5'- -gCUGGuGGcgccgGUCUcggcCGCCGCCGCGgGg -3'
miRNA:   3'- agGACCuCC-----UAGAa---GUGGCGGCGCgC- -5'
9009 5' -58.6 NC_002512.2 + 200316 0.67 0.860496
Target:  5'- cCCUcGGGGAgcggCUUC-CCGCCG-GCGu -3'
miRNA:   3'- aGGAcCUCCUa---GAAGuGGCGGCgCGC- -5'
9009 5' -58.6 NC_002512.2 + 70774 0.67 0.859036
Target:  5'- cUUCUGGGGcaGAUCccgucguccucgUCGCCGuuGCGCa -3'
miRNA:   3'- -AGGACCUC--CUAGa-----------AGUGGCggCGCGc -5'
9009 5' -58.6 NC_002512.2 + 4887 0.67 0.856093
Target:  5'- -gCUGGAGGAgcggCgacgggaagagggCGCCGCCGcCGCc -3'
miRNA:   3'- agGACCUCCUa---Gaa-----------GUGGCGGC-GCGc -5'
9009 5' -58.6 NC_002512.2 + 73974 0.67 0.85312
Target:  5'- -gCUGGAGGAcgcgUCggCGCCGgacucguccCCGCGCc -3'
miRNA:   3'- agGACCUCCU----AGaaGUGGC---------GGCGCGc -5'
9009 5' -58.6 NC_002512.2 + 173327 0.67 0.85312
Target:  5'- gCCUGcGGGGUCUUCGgucCCGgCaCGCGCc -3'
miRNA:   3'- aGGACcUCCUAGAAGU---GGC-G-GCGCGc -5'
9009 5' -58.6 NC_002512.2 + 124997 0.67 0.85312
Target:  5'- cCCUGGAcccGGccccgucgcgccGUCggCGCCGCCcgcuGCGCGa -3'
miRNA:   3'- aGGACCU---CC------------UAGaaGUGGCGG----CGCGC- -5'
9009 5' -58.6 NC_002512.2 + 135014 0.67 0.850872
Target:  5'- gUCCUGGAGGAUUcggGCCggcggacggaucucGCCGCGg- -3'
miRNA:   3'- -AGGACCUCCUAGaagUGG--------------CGGCGCgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.