Results 41 - 60 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9009 | 5' | -58.6 | NC_002512.2 | + | 166385 | 0.67 | 0.845563 |
Target: 5'- aUCCUGGAGGAguguu-CCGCC-CGgGg -3' miRNA: 3'- -AGGACCUCCUagaaguGGCGGcGCgC- -5' |
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9009 | 5' | -58.6 | NC_002512.2 | + | 184951 | 0.67 | 0.845563 |
Target: 5'- gCCUGGcucgagagcauGGAgcg-CGuCCGCCGCGCGg -3' miRNA: 3'- aGGACCu----------CCUagaaGU-GGCGGCGCGC- -5' |
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9009 | 5' | -58.6 | NC_002512.2 | + | 187547 | 0.67 | 0.845563 |
Target: 5'- gCCUGGuccgucucGAUCUgu-CCGUCGCGCGc -3' miRNA: 3'- aGGACCuc------CUAGAaguGGCGGCGCGC- -5' |
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9009 | 5' | -58.6 | NC_002512.2 | + | 7454 | 0.67 | 0.845563 |
Target: 5'- gCCcGGGGGAa----GCCGCgGCGCGg -3' miRNA: 3'- aGGaCCUCCUagaagUGGCGgCGCGC- -5' |
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9009 | 5' | -58.6 | NC_002512.2 | + | 143531 | 0.67 | 0.844797 |
Target: 5'- gCCUGGcGGccUCgUCGCCgucggcgGCCGCGCGu -3' miRNA: 3'- aGGACCuCCu-AGaAGUGG-------CGGCGCGC- -5' |
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9009 | 5' | -58.6 | NC_002512.2 | + | 123201 | 0.67 | 0.837829 |
Target: 5'- aCgaGGAGGAgCUgcccgaggacgUCGCCGCCcaGUGCGg -3' miRNA: 3'- aGgaCCUCCUaGA-----------AGUGGCGG--CGCGC- -5' |
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9009 | 5' | -58.6 | NC_002512.2 | + | 92893 | 0.67 | 0.837829 |
Target: 5'- cUCCUGGAGGcugGUCgaggcgaaCAgCGUCGCGUa -3' miRNA: 3'- -AGGACCUCC---UAGaa------GUgGCGGCGCGc -5' |
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9009 | 5' | -58.6 | NC_002512.2 | + | 170906 | 0.67 | 0.837829 |
Target: 5'- gCCUGGAcacgcuGcgCUUCgagccgauGCUGCCGCGCGu -3' miRNA: 3'- aGGACCUc-----CuaGAAG--------UGGCGGCGCGC- -5' |
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9009 | 5' | -58.6 | NC_002512.2 | + | 84451 | 0.67 | 0.829926 |
Target: 5'- ---cGGAGGAUCUcguccagCACCGCgGCGg- -3' miRNA: 3'- aggaCCUCCUAGAa------GUGGCGgCGCgc -5' |
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9009 | 5' | -58.6 | NC_002512.2 | + | 146142 | 0.67 | 0.829926 |
Target: 5'- gCCgccGGAagaucggcaugcGGAUCgucauccCGCUGCCGCGCGg -3' miRNA: 3'- aGGa--CCU------------CCUAGaa-----GUGGCGGCGCGC- -5' |
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9009 | 5' | -58.6 | NC_002512.2 | + | 145403 | 0.67 | 0.829926 |
Target: 5'- gUCCgGGGuccGGGUCUUCuucggcucguCCGCCGCGg- -3' miRNA: 3'- -AGGaCCU---CCUAGAAGu---------GGCGGCGCgc -5' |
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9009 | 5' | -58.6 | NC_002512.2 | + | 126321 | 0.67 | 0.829926 |
Target: 5'- cUCCUGGAcGA-CgagGCCGCCGCGUc -3' miRNA: 3'- -AGGACCUcCUaGaagUGGCGGCGCGc -5' |
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9009 | 5' | -58.6 | NC_002512.2 | + | 135792 | 0.67 | 0.829926 |
Target: 5'- ---cGGAGGAgUCggaccggcCGCCGCCGuCGCGg -3' miRNA: 3'- aggaCCUCCU-AGaa------GUGGCGGC-GCGC- -5' |
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9009 | 5' | -58.6 | NC_002512.2 | + | 175189 | 0.68 | 0.813637 |
Target: 5'- ---cGGGGGGUUcucccgcgcgUUCAUCGCCGCGUc -3' miRNA: 3'- aggaCCUCCUAG----------AAGUGGCGGCGCGc -5' |
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9009 | 5' | -58.6 | NC_002512.2 | + | 153716 | 0.68 | 0.813637 |
Target: 5'- gUCCUGGucGGGUCUcacggCGCUGuCCGUGgGg -3' miRNA: 3'- -AGGACCu-CCUAGAa----GUGGC-GGCGCgC- -5' |
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9009 | 5' | -58.6 | NC_002512.2 | + | 35906 | 0.68 | 0.813637 |
Target: 5'- aCCUGGAGagcgcGGUCaggaGCCGCCG-GCGg -3' miRNA: 3'- aGGACCUC-----CUAGaag-UGGCGGCgCGC- -5' |
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9009 | 5' | -58.6 | NC_002512.2 | + | 227661 | 0.68 | 0.805264 |
Target: 5'- gUCC-GGAGGAagagcggCggCGCCGCCG-GCGa -3' miRNA: 3'- -AGGaCCUCCUa------GaaGUGGCGGCgCGC- -5' |
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9009 | 5' | -58.6 | NC_002512.2 | + | 100822 | 0.68 | 0.805264 |
Target: 5'- aCCUGGAcgaGGAUgUUCAUCGgCGUGaCGu -3' miRNA: 3'- aGGACCU---CCUAgAAGUGGCgGCGC-GC- -5' |
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9009 | 5' | -58.6 | NC_002512.2 | + | 125084 | 0.68 | 0.805264 |
Target: 5'- cCCUGGAGuacaa-C-CCGCCGCGCGc -3' miRNA: 3'- aGGACCUCcuagaaGuGGCGGCGCGC- -5' |
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9009 | 5' | -58.6 | NC_002512.2 | + | 107872 | 0.68 | 0.796749 |
Target: 5'- gCgUGGAGGccGUCgUCACCuugGCCGcCGCGa -3' miRNA: 3'- aGgACCUCC--UAGaAGUGG---CGGC-GCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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