miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9009 5' -58.6 NC_002512.2 + 174065 1.09 0.002606
Target:  5'- cUCCUGGAGGAUCUUCACCGCCGCGCGg -3'
miRNA:   3'- -AGGACCUCCUAGAAGUGGCGGCGCGC- -5'
9009 5' -58.6 NC_002512.2 + 193308 0.8 0.210466
Target:  5'- cUCCUGGAGG-UCUcCACCGCCGCcucccggcuccaGCGg -3'
miRNA:   3'- -AGGACCUCCuAGAaGUGGCGGCG------------CGC- -5'
9009 5' -58.6 NC_002512.2 + 32548 0.79 0.253328
Target:  5'- --gUGGGGGAUCUUCuccaGCCGCCGgGCGc -3'
miRNA:   3'- aggACCUCCUAGAAG----UGGCGGCgCGC- -5'
9009 5' -58.6 NC_002512.2 + 132489 0.78 0.277331
Target:  5'- cCCaGGAGGAaCUgcgucauguugaUCACCGCCGUGCGg -3'
miRNA:   3'- aGGaCCUCCUaGA------------AGUGGCGGCGCGC- -5'
9009 5' -58.6 NC_002512.2 + 98583 0.78 0.283608
Target:  5'- aUCC-GGAGGAUCUUC-CCGaccucCCGCGCGu -3'
miRNA:   3'- -AGGaCCUCCUAGAAGuGGC-----GGCGCGC- -5'
9009 5' -58.6 NC_002512.2 + 200932 0.78 0.283608
Target:  5'- aCCUGGcucAGGAUCUUCugCGCCGUcgaGUGg -3'
miRNA:   3'- aGGACC---UCCUAGAAGugGCGGCG---CGC- -5'
9009 5' -58.6 NC_002512.2 + 220529 0.75 0.424136
Target:  5'- aCCUGGAGGA-----GCUGCUGCGCGa -3'
miRNA:   3'- aGGACCUCCUagaagUGGCGGCGCGC- -5'
9009 5' -58.6 NC_002512.2 + 47319 0.74 0.449848
Target:  5'- -gCUGGAGGAgaugUACCGCgGCGCGu -3'
miRNA:   3'- agGACCUCCUagaaGUGGCGgCGCGC- -5'
9009 5' -58.6 NC_002512.2 + 149290 0.74 0.485416
Target:  5'- gCgaGGAGGGcgagaUCgUCgACCGCCGCGCGg -3'
miRNA:   3'- aGgaCCUCCU-----AGaAG-UGGCGGCGCGC- -5'
9009 5' -58.6 NC_002512.2 + 133653 0.74 0.494518
Target:  5'- gUCC-GGGGcGGUCgcCGCCGCCGcCGCGg -3'
miRNA:   3'- -AGGaCCUC-CUAGaaGUGGCGGC-GCGC- -5'
9009 5' -58.6 NC_002512.2 + 186198 0.73 0.503696
Target:  5'- cUCCUGGAGGGcUCgggCGCCGaugaCGcCGCGg -3'
miRNA:   3'- -AGGACCUCCU-AGaa-GUGGCg---GC-GCGC- -5'
9009 5' -58.6 NC_002512.2 + 190155 0.73 0.522269
Target:  5'- aCCgGGuGGGUCUUCACCGUCGU-CGa -3'
miRNA:   3'- aGGaCCuCCUAGAAGUGGCGGCGcGC- -5'
9009 5' -58.6 NC_002512.2 + 148827 0.72 0.58906
Target:  5'- gUCCUGGGGGcgGUCcgggcgCACCGCUGC-CGg -3'
miRNA:   3'- -AGGACCUCC--UAGaa----GUGGCGGCGcGC- -5'
9009 5' -58.6 NC_002512.2 + 7558 0.72 0.59876
Target:  5'- cUCCUGGAGG-----CGCCGCCGCaGCc -3'
miRNA:   3'- -AGGACCUCCuagaaGUGGCGGCG-CGc -5'
9009 5' -58.6 NC_002512.2 + 137781 0.72 0.608482
Target:  5'- gUCUGGAGG-UCggCGCUcggcggGCCGCGCGu -3'
miRNA:   3'- aGGACCUCCuAGaaGUGG------CGGCGCGC- -5'
9009 5' -58.6 NC_002512.2 + 219164 0.71 0.61822
Target:  5'- cUCCgccGAGGA-CUUCGCCGCCGUcgGCu -3'
miRNA:   3'- -AGGac-CUCCUaGAAGUGGCGGCG--CGc -5'
9009 5' -58.6 NC_002512.2 + 120711 0.71 0.61822
Target:  5'- aCCUGG-GGcUCUUCAucCCGgccCCGCGCGa -3'
miRNA:   3'- aGGACCuCCuAGAAGU--GGC---GGCGCGC- -5'
9009 5' -58.6 NC_002512.2 + 106579 0.71 0.627968
Target:  5'- gUCCUGuccGAUCUUCuucacCCGCCGCGCc -3'
miRNA:   3'- -AGGACcucCUAGAAGu----GGCGGCGCGc -5'
9009 5' -58.6 NC_002512.2 + 146904 0.71 0.637718
Target:  5'- -gCUGGAGGcggccgacGUCUUC-CgCGCCGUGCGc -3'
miRNA:   3'- agGACCUCC--------UAGAAGuG-GCGGCGCGC- -5'
9009 5' -58.6 NC_002512.2 + 129019 0.7 0.686269
Target:  5'- gCCgGGAGGAguUCga-ACCgGCCGUGCGg -3'
miRNA:   3'- aGGaCCUCCU--AGaagUGG-CGGCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.