miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9009 5' -58.6 NC_002512.2 + 4887 0.67 0.856093
Target:  5'- -gCUGGAGGAgcggCgacgggaagagggCGCCGCCGcCGCc -3'
miRNA:   3'- agGACCUCCUa---Gaa-----------GUGGCGGC-GCGc -5'
9009 5' -58.6 NC_002512.2 + 7454 0.67 0.845563
Target:  5'- gCCcGGGGGAa----GCCGCgGCGCGg -3'
miRNA:   3'- aGGaCCUCCUagaagUGGCGgCGCGC- -5'
9009 5' -58.6 NC_002512.2 + 7558 0.72 0.59876
Target:  5'- cUCCUGGAGG-----CGCCGCCGCaGCc -3'
miRNA:   3'- -AGGACCUCCuagaaGUGGCGGCG-CGc -5'
9009 5' -58.6 NC_002512.2 + 8373 0.68 0.779322
Target:  5'- gCC--GAGGAUCcgCGgCGCCGCGCa -3'
miRNA:   3'- aGGacCUCCUAGaaGUgGCGGCGCGc -5'
9009 5' -58.6 NC_002512.2 + 9941 0.68 0.796749
Target:  5'- aCCcGGGGGAUC--CACCcucccCCGCGCGu -3'
miRNA:   3'- aGGaCCUCCUAGaaGUGGc----GGCGCGC- -5'
9009 5' -58.6 NC_002512.2 + 16024 0.66 0.904863
Target:  5'- gCCgGGuggggaagggcagcGGGAUCUUCucccCgCGCCGCGCc -3'
miRNA:   3'- aGGaCC--------------UCCUAGAAGu---G-GCGGCGCGc -5'
9009 5' -58.6 NC_002512.2 + 20712 0.69 0.761416
Target:  5'- gUCCacGAGGAUCUU-GCgCGCCGUGCc -3'
miRNA:   3'- -AGGacCUCCUAGAAgUG-GCGGCGCGc -5'
9009 5' -58.6 NC_002512.2 + 25063 0.66 0.900658
Target:  5'- cUCCcGGAcGGA-----GCCGCCGCGCc -3'
miRNA:   3'- -AGGaCCU-CCUagaagUGGCGGCGCGc -5'
9009 5' -58.6 NC_002512.2 + 30531 0.66 0.894473
Target:  5'- -gCUGGAGccgguGAUCUcguUCGCCGUgGgCGCGg -3'
miRNA:   3'- agGACCUC-----CUAGA---AGUGGCGgC-GCGC- -5'
9009 5' -58.6 NC_002512.2 + 30589 0.66 0.888079
Target:  5'- gUCCUGGAGGAggc-CACCaaCCggaggGCGCGg -3'
miRNA:   3'- -AGGACCUCCUagaaGUGGc-GG-----CGCGC- -5'
9009 5' -58.6 NC_002512.2 + 32548 0.79 0.253328
Target:  5'- --gUGGGGGAUCUUCuccaGCCGCCGgGCGc -3'
miRNA:   3'- aggACCUCCUAGAAG----UGGCGGCgCGC- -5'
9009 5' -58.6 NC_002512.2 + 35151 0.67 0.860496
Target:  5'- cCCacggUGGA-GAUCggCACCaGCCGCGCc -3'
miRNA:   3'- aGG----ACCUcCUAGaaGUGG-CGGCGCGc -5'
9009 5' -58.6 NC_002512.2 + 35803 0.66 0.873298
Target:  5'- uUCUUGGAGGAUCgcggacaguCUGCUGCaGCu -3'
miRNA:   3'- -AGGACCUCCUAGaagu-----GGCGGCG-CGc -5'
9009 5' -58.6 NC_002512.2 + 35906 0.68 0.813637
Target:  5'- aCCUGGAGagcgcGGUCaggaGCCGCCG-GCGg -3'
miRNA:   3'- aGGACCUC-----CUAGaag-UGGCGGCgCGC- -5'
9009 5' -58.6 NC_002512.2 + 36968 0.66 0.906633
Target:  5'- cCCUGGcaucGGAggcggcUCUggACCGCCGCGg- -3'
miRNA:   3'- aGGACCu---CCU------AGAagUGGCGGCGCgc -5'
9009 5' -58.6 NC_002512.2 + 38921 0.67 0.867685
Target:  5'- gCCcGGAGGG-----GCCGCCGCgGCGg -3'
miRNA:   3'- aGGaCCUCCUagaagUGGCGGCG-CGC- -5'
9009 5' -58.6 NC_002512.2 + 45065 0.66 0.888079
Target:  5'- --aUGGAGGug--UCGCgGCCGgCGCGg -3'
miRNA:   3'- aggACCUCCuagaAGUGgCGGC-GCGC- -5'
9009 5' -58.6 NC_002512.2 + 45546 0.69 0.743093
Target:  5'- aCUUGGGGuaccUCUUCuuGCCGUCGCGCa -3'
miRNA:   3'- aGGACCUCcu--AGAAG--UGGCGGCGCGc -5'
9009 5' -58.6 NC_002512.2 + 47319 0.74 0.449848
Target:  5'- -gCUGGAGGAgaugUACCGCgGCGCGu -3'
miRNA:   3'- agGACCUCCUagaaGUGGCGgCGCGC- -5'
9009 5' -58.6 NC_002512.2 + 50570 0.7 0.714021
Target:  5'- -gCUGcAGGAUCUgcccgccUCGCCGCC-CGCGg -3'
miRNA:   3'- agGACcUCCUAGA-------AGUGGCGGcGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.