miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9009 5' -58.6 NC_002512.2 + 227661 0.68 0.805264
Target:  5'- gUCC-GGAGGAagagcggCggCGCCGCCG-GCGa -3'
miRNA:   3'- -AGGaCCUCCUa------GaaGUGGCGGCgCGC- -5'
9009 5' -58.6 NC_002512.2 + 226234 0.67 0.860496
Target:  5'- gCC-GGAGcGAUCUUaucgcCACCGCgGcCGCGa -3'
miRNA:   3'- aGGaCCUC-CUAGAA-----GUGGCGgC-GCGC- -5'
9009 5' -58.6 NC_002512.2 + 220529 0.75 0.424136
Target:  5'- aCCUGGAGGA-----GCUGCUGCGCGa -3'
miRNA:   3'- aGGACCUCCUagaagUGGCGGCGCGC- -5'
9009 5' -58.6 NC_002512.2 + 219164 0.71 0.61822
Target:  5'- cUCCgccGAGGA-CUUCGCCGCCGUcgGCu -3'
miRNA:   3'- -AGGac-CUCCUaGAAGUGGCGGCG--CGc -5'
9009 5' -58.6 NC_002512.2 + 215093 0.66 0.874681
Target:  5'- aCC--GAGGAcuUCgUCGCCGCCGCGg- -3'
miRNA:   3'- aGGacCUCCU--AGaAGUGGCGGCGCgc -5'
9009 5' -58.6 NC_002512.2 + 211885 0.69 0.752303
Target:  5'- cCCUGGAgcGGGUCaccUUCcgggGCUGCCGCGUc -3'
miRNA:   3'- aGGACCU--CCUAG---AAG----UGGCGGCGCGc -5'
9009 5' -58.6 NC_002512.2 + 202126 0.67 0.860496
Target:  5'- -gCUGGuGGcgccgGUCUcggcCGCCGCCGCGgGg -3'
miRNA:   3'- agGACCuCC-----UAGAa---GUGGCGGCGCgC- -5'
9009 5' -58.6 NC_002512.2 + 200932 0.78 0.283608
Target:  5'- aCCUGGcucAGGAUCUUCugCGCCGUcgaGUGg -3'
miRNA:   3'- aGGACC---UCCUAGAAGugGCGGCG---CGC- -5'
9009 5' -58.6 NC_002512.2 + 200316 0.67 0.860496
Target:  5'- cCCUcGGGGAgcggCUUC-CCGCCG-GCGu -3'
miRNA:   3'- aGGAcCUCCUa---GAAGuGGCGGCgCGC- -5'
9009 5' -58.6 NC_002512.2 + 195789 0.66 0.874681
Target:  5'- aUCC-GGGGGAUgUUCcaauuUgGCCGCGCc -3'
miRNA:   3'- -AGGaCCUCCUAgAAGu----GgCGGCGCGc -5'
9009 5' -58.6 NC_002512.2 + 193359 0.69 0.761416
Target:  5'- aCCgUGGAGGAggagUUCGUCGCCGCGgGc -3'
miRNA:   3'- aGG-ACCUCCUag--AAGUGGCGGCGCgC- -5'
9009 5' -58.6 NC_002512.2 + 193308 0.8 0.210466
Target:  5'- cUCCUGGAGG-UCUcCACCGCCGCcucccggcuccaGCGg -3'
miRNA:   3'- -AGGACCUCCuAGAaGUGGCGGCG------------CGC- -5'
9009 5' -58.6 NC_002512.2 + 193231 0.66 0.888079
Target:  5'- gCCUGG-GGGUCa--ACUGCCGacgGCGg -3'
miRNA:   3'- aGGACCuCCUAGaagUGGCGGCg--CGC- -5'
9009 5' -58.6 NC_002512.2 + 190546 0.67 0.860496
Target:  5'- cUCCU-GAGGccaCgcgUACCGCCGCGUGc -3'
miRNA:   3'- -AGGAcCUCCua-Gaa-GUGGCGGCGCGC- -5'
9009 5' -58.6 NC_002512.2 + 190155 0.73 0.522269
Target:  5'- aCCgGGuGGGUCUUCACCGUCGU-CGa -3'
miRNA:   3'- aGGaCCuCCUAGAAGUGGCGGCGcGC- -5'
9009 5' -58.6 NC_002512.2 + 187547 0.67 0.845563
Target:  5'- gCCUGGuccgucucGAUCUgu-CCGUCGCGCGc -3'
miRNA:   3'- aGGACCuc------CUAGAaguGGCGGCGCGC- -5'
9009 5' -58.6 NC_002512.2 + 186198 0.73 0.503696
Target:  5'- cUCCUGGAGGGcUCgggCGCCGaugaCGcCGCGg -3'
miRNA:   3'- -AGGACCUCCU-AGaa-GUGGCg---GC-GCGC- -5'
9009 5' -58.6 NC_002512.2 + 185652 0.67 0.861224
Target:  5'- cUCCUGGGGGAcgucgcggggauccUgaaguccuucggucuCUUCugCGCCucgcuGCGCGa -3'
miRNA:   3'- -AGGACCUCCU--------------A---------------GAAGugGCGG-----CGCGC- -5'
9009 5' -58.6 NC_002512.2 + 185429 0.66 0.881481
Target:  5'- cCCUGGAGG-UCUUCGagGCCGUc-- -3'
miRNA:   3'- aGGACCUCCuAGAAGUggCGGCGcgc -5'
9009 5' -58.6 NC_002512.2 + 185305 0.69 0.761416
Target:  5'- gUCCUGGAGGGgcgcgaggagCUgcccgucugcgUCGCCGCCcGgGUGg -3'
miRNA:   3'- -AGGACCUCCUa---------GA-----------AGUGGCGG-CgCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.